References

HYDRUS References

See also Hydrus-1D selected references

Outside reviews of the HYDRUS software packages

Visit our page with HYDRUS reviews

• McCray, J., HYDRUS – Software Review, Southwest Hydrology, 6(1), 41, 2007.
• Tyler, S. 2004. ”Review of Hydrus-2D.” Southwest Hydrology, 3(6):37.
• Scanlon, B. 2004. ”Review of Hydrus-1D.” Southwest Hydrology, 3(4):37.
• MDH Engineered Solutions. 2003. Evaluation of Computer Models for Predicting the Fate and Transport of Salt in Soil and Groundwater, Phase I Report. Pub. No: T/403
  ISBN No. 0-7785-2493-0 (Printed Edition), ISBN No. 0-7785-2494-9 (On-line Edition).
• Diodato, D. M. 2000. ”Software Spotlight (Review of Hydrus-2D)”. Ground Water, 38(1), 10-11.

Customer Projects

Dear HYDRUS users, we would like to encourage you to publish here your projects.

	Virtual Experiments to Explore Non-Linear Soil Moisture-Hydrology Interactions at the Hillslope Scale L. Hopp and J.J. McDonnell Department of Forest Engineering, Oregon State University, Corvallis, USA Abstract Hopp_AGU07_abstract.pdf (19 kB), Read more about the project: Hoop_AGU07.pdf (4.4 MB)
	Dynamics of Water Flow in Putting Greens via Computer Simulation McCoy, Ed. and Kevin McCoy, , USGA Turfgrass and Environmental Research Online 5(17):1-15, 2006. Read more about the project TurfGrass-2006.pdf (636 kB)

  Have we missed your work? Please, let us know. HYDRUS team.

HYDRUS Workshops Proceedings

• Proceedings of the First HYDRUS Workshop, October 19, 2005, S. Torkzaban and S. M. Hassanizadeh (eds.), Department of Earth Sciences, Utrecht University, The Netherlands, ISBN 90-39341125, PDF document, size 4MB.
• Proceedings of the Second HYDRUS Workshop, March 28, 2008, J. Šimůnek and R. Kodešová (eds.) (eds.), Dept. of Soil Science and Geology, Czech University of Life Sciences, Prague, Czech Republic, ISBN 978-80-213-1783-3, PDF document, size 3.3MB.
• Proceedings of the Third HYDRUS Workshop, June 28, 2008, Saito, H., M. Sakai, N. Toride, and J. Šimůnek (eds.), Dept. of Ecoregion Science, Tokyo University of Agriculture & Technology, Fuchu Tokyo, Japan, ISBN 978-4-9901192-5-6, PDF document, size 7.2MB.

HYDRUS 2D/3D Selected References

Including Hydrus-2D & Meshgen-2DReferences (former version of HYDRUS 2D-Standard)
(Notice that Hydrus-2D is an update of both SWMS-2D and CHAIN-2D)

... * Water Flow ...
... ** Solute Transport ...
... + Inverse Problem ...

2010

1. Castanheira, P. J. N. and R. P. Serralheiro, Impact of mole drains on salinity of a vertisoil under irrigation, Biosystems Engineering, In Press, Corrected Proof, Available online 7 November 2009.
2. Doltra, J., and P. Muñoz, Simulation of nitrogen leaching from a fertigated crop rotation in a Mediterranean climate using the EU-Rotate_N and Hydrus-2D models, Agricultural Water Management, 97(2), 277 – 285, 2010.
3. Huisman, J. A., J. Rings, J.A. Vrugt, J. Sorg, and H. Vereecken, Hydraulic properties of a model dike from coupled Bayesian and multi-criteria hydrogeophysical inversion, Journal of Hydrology, 380(1-2), 62-73, 2010.
4. Kalin, J., B. Petkovšek, Ph. Montarnal, A. Genty, E. Deville, J. Krivic, and J. Ratej, Comparison of two numerical modelling codes for hydraulic and transport calculations in the near-field, Nuclear Engineering and Design, In Press, Corrected Proof, Available online 26 May 2010.
5. Kampf, S. K., and Stephen J. Burges, Quantifying the water balance in a planar hillslope plot: Effects of measurement errors on flow prediction, Journal of Hydrology, 380(1-2), 191-202, 2010.
6. Kandelous, M. M., and J. Šimůnek, Numerical simulations of water movement in a subsurface drip irrigation system under field and laboratory conditions using HYDRUS-2D, Agricultural Water Management, 97, 1070-1076, 2010.
7. Kandelous, M. M., and J. Šimůnek, Comparison of numerical, analytical and empirical models to estimate wetting pattern for surface and subsurface drip irrigation, Irrigation Sci., 28(5), 10.1007/s00271-009-0205-9, 435-444, 2010.
8. Kodešová, R., J. Šimůnek, A. Nikodem, and V. Jirků, Estimation of the dual-permeability model parameters using tension disk infiltrometer and Guelph permeameter, Vadose Zone Journal, Special Section: "Preferential Flow", doi:10.2136/vzj2009.0069, 9(2), 213-225, 2010.
9. Nikodem, A., R. Kodešová, O. Drábek, L. Bubeníčková, L. Borůvka, L. Pavlů, and V. Tejnecký, A Numerical Study of the Impact of Precipitation Redistribution in a Beech Forest Canopy on Water and Aluminum Transport in a Podzol, Vadose Zone J., 9 (2), 238–251, doi:10.2136/vzj2009.0083, 2010.
10. Robinson, D. A., I. Lebron, R. J. Ryel, and S. B. Jones, Soil Water Repellency, a Method of Soil Moisture Sequestration in Pinyon – Juniper Woodland, Soil Sci. Soc. Am. J., in press.
11. Siyal, A. A., T. H. Skaggs, and M. Th. van Genuchten, Reclamation of Saline Soils by Partial Ponding: Simulations for Different Soils, Vadose Zone Journal, doi:10.2136/vzj2009.0129, 9(2), 486-495, 2010.
12. Sperling, I., and N. Lazarovitch, Characterization of Water Infiltration and Redistribution for Two-Dimensional Soil Profiles by Moment Analyses, Vadose Zone J. 9(2), 438–444, doi:10.2136/vzj2009.0098, 2010.
13. Thompson, A., M. Nimmer, and D. Misra, Effects of variations in hydrogeological parameters on water-table mounding in sandy loam and loamy sand soils beneath stormwater infiltration basins, Hydrogeology Journal, 18, 501–508, 2010.

2009

1. Batlle-Aguilar, J., S. Schneider, M. Pessel, P. Tucholka, Y. Coquet, and P. Vachier, Axisymetrical Infiltration in Soil Imaged by Noninvasive Electrical Resistivimetry, Soil Sci. Soc. Am. J., 73, 510-520, 2009.
2. Chou, P. Y., and G. Wyseure, Hydrodynamic dispersion characteristics of lateral inflow into a river tested by a laboratory model, Hydrol. Earth Syst. Sci., 13, 217–228, 2009.
3. Cook, F. J., J. H. Knight, and R. A. Wooding, Steady Groundwater Flow To Drains On A Sloping Bed: Comparison of Solutions based on Boussinesq Equation and Richards Equation, Transport in Porous Media, 2009 (in press).
4. Dontsova, K., C. I. Steefel, S. Desilets, A. Thompson, and J. Chorover, Coupled modeling of hydrologic and geochemical fluxes for prediction of solid phase evolution in the Biosphere 2 hillslope experiment, Hydrol. Earth Syst. Sci. Discuss., 6, 4449–4483, 2009.
5. Elmaloglou, S. and. E. Diamantopoulos, Simulation of soil water dynamics under subsurface drip irrigation from line sources, Agricultural Water Management, 96, 1587–1595, 2009.
6. Essig, E. T., C. Corradini, R. Morbidelli, and R. S. Govindaraju, Infiltration and deep flow over sloping surfaces: Comparison of numerical and experimental results, Journal of Hydrology, 374(1-2), 30-42, 2009.
7. Goyal, V., B. S. Jhorar, R. S. Malik, and T. Streck, Simulation of groundwater recharge from an aquifer storage recovery well under shallow water-table condition, Current Science, 96(3), 376-385, 2009.
8. Hanson, B. R., D. E. May, J. Šimůnek, J. W. Hopmans, and R. B. Hutmacher, Drip irrigation provides the salinity control needed for profitable irrigation of tomatoes in the San Joaquin Valley, California Agriculture, 63(3), 131-136, 2009.
9. Hinnell, A. C., N. Lazarovitch, and A. W. Warrick, Explicit infiltration function for boreholes under constant head conditions, Water Resour. Res., 45, W10429, doi:10.1029/2008WR007685, 2009.
10. Hopp, L., C. Harman, S. Desilets, C. Graham, J. McDonnell, and P. Troch, Hillslope hydrology under glass: confronting fundamental questions of soil-water-biota co-evolution at Biosphere 2, Hydrol. Earth Syst. Sci. Discuss., 6, 4411–4448, 2009.
11. Hopp, L., and J. J. McDonnell, Connectivity at the hillslope scale: Identifying interactions between storm size, bedrock permeability, slope angle and soil depth, Journal of Hydrology, 376(3-4), 378-391, 2009.
12. Janssen, M. and B. Lennartz, Water losses through paddy bunds: Methods, experimental data, and simulation studies, Journal of Hydrology, 369(1-2), 142-153, 2009.
13. Kechavarzi, C., K. Špongrová, M. Dresser, S. Matula, and R. J. Godwin, Laboratory and field testing of an automated tension infiltrometer, Biosystems Engineering, 104, 266–277, doi:10.1016/j.biosystemseng.2009.06.014, 2009.
14. Lamy, E., L. Lassabatere, B. Bechet, H. Andrieu, Modeling the influence of an artificial macropore in sandy columns on flow and solute transfer, J. Hydrol., doi:10.1016/j.jhydrol.2009.07.048, 2009.
15. Lazarovitch, N., M. Poulton, A. Furman, A. W. Warrick, Water distribution under trickle irrigation predicted using artificial neural networks, J. Eng. Math., DOI 10.1007/s10665-009-9282-2, 2009.
16. Lazarovitch, N., A. W. Warrick, A. Furman, and D. Zerihun, Subsurface Water Distribution from Furrows Described by Moment Analyses, Journal of Irrigation and Drainage Engineering, 135(1), 7–12, 2009.
17. Lü, H., Y. Zhu, T. H. Skaggs, and Z. Yu, Comparison of measured and simulated water storage in dryland terraces of the Loess Plateau, China, Agricultural Water Management, 96(2), 299-306, 2009.
18. McCoy, E. L., and K.R. McCoy, Simulation of putting-green soil water dynamics: Implications for turfgrass water use, Agricultural Water Management, 2008.
19. Mubarak, I., J. C. Mailhol, R. Angulo-Jaramillo, S. Bouarfa, and P. Ruelle, Effect of temporal variability in soil hydraulic properties on simulated water transfer under high-frequency drip irrigation, Agricultural Water Management, 96(11), 1547 – 1559, 2009.
20. Nimmer, M., A. Thompson, and D. Misra, Water Table Mounding Beneath Stormwater Infiltration Basins, Environmental & Engineering Geoscience, 15(2), 67-79, 2009.
21. Phogat, V., R. S., Malik, K. Sanjay, 2009. Modeling (HYDRUS -2D) the effect of canal bed elevation on seepage and water table rise in a sand box filled with loamy soil, Irrig. Sci., 27, 191-200, 2009.
22. Pohlmeier, A., D. van Dusschoten, L. Weihermüller, U. Schurr, and H. Vereecken, Imaging water fluxes in porous media by magnetic resonance imaging using D2O as a tracer, Magnetic Resonance Imaging, 27(2), 285-292, 2009.
23. Radcliffe, D. E., and L. T. West , Design Hydraulic Loading Rates for Onsite Wastewater Systems, Vadose Zone J., 8, 64-74, 2009.
24. Roberts, T., N. Lazarovitch, A. W. Warrick, and T. L. Thompson, Modeling Salt Accumulation with Subsurface Drip Irrigation Using HYDRUS-2D, Soil Sci. Soc. Am. J., 73(1), 233-240, 2009.
25. Sander, T., and H. H. Gerke, Modelling field-data of preferential flow in paddy soil induced by earthworm burrows, J. Contam. Hydrol., doi:10.1016/j.jconhyd.2008.11.003, 104(1-4), 129-136, 2009.
26. Segal, E., P. Shouse, and S. A. Bradford, Deterministic Analysis and Upscaling of Bromide Transport in a Heterogeneous Vadose Zone, Vadose Zone J. 8(3), 601-610, 2009.
27. Šimůnek, J. and J. W. Hopmans, Modeling compensated root water and nutrient uptake, Ecological Modeling, doi:10.1016/j.ecolmodel.2008.11.004, 220(4), 505-521, 2009.
28. Siyal, A. A., T. H. Skaggs, Measured and simulated soil wetting patterns under porous clay pipe sub-surface irrigation, Agricultural Water Management, 96(6), 893 – 904, 2009.
29. Siyal, A. A., M. Th. van Genuchten, and T. H. Skaggs, Performance of pitcher irrigation systems, Journal of Soil Science, 174(6), 312-320, 2009.
30. Siyal, A. A., M. Th. van Genuchten, T. H. and Skaggs, Reclamation of saline soils by partial ponding: Simulations with HYDRUS-2D/3D for different soil types and profiles, Vadose Zone Journal, 2009.
31. Thompson, M. L., F. X. M. Casey, E. Khan, H. Hakk, G. L. Larsen, and T. DeSutter, Occurrence and pathways of manure-borne 17β-estradiol in vadose zone water, Chemosphere, 76(4), 472-479, 2009.
32. Toscano, A., G. Langergraber, S. Consoli, and G. L. Cirelli, Modelling pollutant removal in a pilot-scale two-stage subsurface flow constructed wetlands, Ecological Engineering, 35(2), 281-289, Sp. Iss. SI, 2009.
33. Verbist, K., J. Baetens, W.M. Cornelis, D. Gabriels, C. Torres, and G. Soto, Hydraulic Conductivity as Influenced by Stoniness in Degraded Drylands of Chile, Soil Sci. Soc. Am. J., 73, 471-484, 2009.
34. Wöhling, T., N. Schütze B. Heinrich, J. Šimůnek, and G. F. Barkle, Three-dimensional modeling of multiple automated equilibrium tension lysimeters to measure vadose zone fluxes, Vadose Zone Journal, 8, 1051–1063, doi:10.2136/vzj2009.0040, 2009.

2008

1. Akay, O., G. A. Fox, and J. Šimůnek, Numerical simulation of water flow during macropore/subsurface drain interaction using HYDRUS, Vadose Zone Journal, 7(3), 909-918, 2008.
2. Arbat, G., J. Puig-Bargues, J. Barragan, J. Bonany, and F. Ramirez de Cartagena, Monitoring soil water status for micro-irrigation management versus modelling approach, Biosystems Eng., 100(2), 286-296, 2008.
3. Beal, C. D., D. W. Rassam, E. A. Gardner, G. Kirchhof, and N. W. Menzies, Influence of hydraulic loading and effluent flux on surface surcharging in soil absorption systems, Journal of Hydrologic Engineering, 13(8), 681-692, 2008.
4. Bogner, C., S. Engelhardt, J. Zeilinger, and B. Huwe, Visualization and Analysis of Flow Patterns and Water Flow Simulations in Disturbed and Undisturbed Tropical Soils, Chapter 30, In E. Beck et al. (eds.), Gradients in a Tropical Mountain Ecosystem of Ecuador, Ecological Studies 198, 387-396, Springer-Verlag Berlin, 2008.
5. Canora, F., M. D. Fidelibus, A. Sciortino, and G. Spilotro, Variation of infiltration rate through karstic surfaces due to land use changes: A case study in Murgia (SE-Italy), Engineering Geology, 99(3-4), 210-227, 2008.
6. Chotpantarat, Srilert, Say Kee Ong, Chakkaphan Sutthirat, and Khemarath Osathaphan, Influence of Environmental Factors on Nonequilibrium Transport of Mn2+ Through Lateritic Aquifer: A Case Study of Gold Mine in Thailand, Proceedings of the International Symposia on Geoscience Resources and Environments of Asian Terranes (GREAT 2008), 4th IGCP 516,and 5th APSEG, November 24-26, 2008, Bangkok, Thailand, 2008.
7. Crevoisier, D., Z. Popova, J. C. Mailhol, and P. Ruelle, Assessment and simulation of water and nitrogen transfer under furrow irrigation, Agricultural Water Management, 95(4), 354-366, 2008.
8. De Silva, M.S., M. H. Nachabe, J. Šimůnek, and R. Carnahan, Simulating root water uptake from a heterogeneous vegetative cover, J. Irrig. Drain. Engin.-ASCE, 134(2), 167-174, DOI: 10.1061/(ASCE)0733-9437(2008)134:2(167), 2008.
9. Dudley, L. M., A. Ben-Gal, N. Lazarovitch, Drainage Water Reuse: Biological, Physical, and Technological Considerations for System Management, J. Environ. Qual., 37, S-25–S-35, 2008.
10. Finch, S. D., D. E. Radcliffe, and L. T. West, Modeling trench sidewall and bottom flow in on-site wastewater systems, J. Hydrol. Eng., 13, 693–701, 2008.
11. Franklin, M., H. Monken Fernandes, and M. Th. van Genuchten, Modeling the water flow in unsaturated waste rock pile: an important step in the overall closure planning of the first uranium mining site in Brazil, in Uranium, Mining and Hydrogeology, Springer Berlin, ISBN 978-3-540-87745-5, 177-186, 2008.
12. Hanson, B. R., J. Šimůnek, and J. W. Hopmans, Leaching with subsurface drip irrigation under saline, shallow ground water conditions, Vadose Zone Journal, doi:10.2136/VZJ2007.0053, Special Issue “Vadose Zone Modeling”, 7(2), 810-818, 2008.
13. Hassan, G., R. B. Reneau, Jr., C. Hagedorn, and A. R. Jantrania, Modeling effluent distribution and nitrate transport through an on-site wastewater system, J. Environ. Quality, 37, 1937-1948, 2008.
14. Heinse, R., S. B. Jones, S. L. Steinberg, M. Tuller, and D. Or, Measurements and modeling of variable gravity effects on water distribution and flow in unsaturated porous media, Vadose Zone J., 6(2), 713–724, 2008.
15. Iversen, B. V., and P. van der Keur, and H. Vosgerau, Hydrogeological Relationships of Sandy Deposits: Modeling of Two-Dimensional Unsaturated Water and Pesticide Transport, J. Environ. Qual., 37, 1909–1917, 2008.
16. Lazarovitch, N., Discussion of “Using HYDRUS-2D Simulation Model to Evaluate Wetted Soil Volume in Subsurface Drip Irrigation Systems” by Giuseppe Provenzano, Journal of Irrigation and Drainage Engineering, 134(6), 877–878, 2008.
17. Mishurov, M., A. Yakirevich, and N. Weisbrod, Colloid Transport in a Heterogeneous Partially Saturated Sand Column, Environ. Sci. Technol., 42, 1066–1071, 2008.
18. Patel, N. and T. B. S. Rajput, Dynamics and modeling of soil water under subsurface drip irrigated onion, Agricultural Water Management, 95(12), 1335-1349, 2008.
19. Perea-Estrada, H., K. Oleschko-Lutkova, J. Ramirez-Luna, and V. Ruiz-Carmona, Porous emitter irrigation: characterization and simulation, Ingenieria Hidraulica En Mexico, 23(4), 189-204, 2008.
20. Roberts, T. L., S. A. White, A. W. Warrick, and T. L. Thompson, Tape depth and germination method influence patterns of salt accumulation with subsurface drip irrigation, Agricultural Water Management, 95(6), 669-677, 2008.
21. Saintenoy, A., S. Schneider, and P. Tucholka, Evaluating Ground Penetrating Radar Use for Water Infiltration Monitoring, doi:10.2136/vzj2007.0132, Vadose Zone J., 7, 208–214, 2008.
22. Sansoulet, J., Y.-M. Cabidoche, P. Cattan, S. Ruy, and J. Šimůnek, Spatially distributed water fluxes in an Andisol under banana plants: experiments and 3D modelling, Vadose Zone Journal, doi:10.2136/VZJ2007.0073, Special Issue “Vadose Zone Modeling”, 7(2), 819-829, 2008.
23. Schaap, J. D., P. Lehmann, A. Kaestner, P. Vontobel, R. Hassanein, G. Frei, G.H. de Rooij, E. Lehmann, and H. Flühler, Measuring the effect of structural connectivity on the water dynamics in heterogeneous porous media using speedy neutron tomography, Advances in Water Resources, 31(9), 1233-1241, 2008.
24. Segal, E., S. A. Bradford, P. Shouse, N. Lazarovitch, and D. Corwin, Integration of hard and soft data to characterize field-scale hydraulic properties for flow and transport studies, Vadose Zone J., 7, 878-889, 2008.
25. Segal, E., T. Kushnir, Y. Mualem, and U. Shani, Water uptake and hydraulics of the root hair rhizosphere, Vadose Zone J., 7, 1027-1034, 2008.

2007

1. Ajdary, K., D. K. Singh, A. K. Singh, and M. Khanna, Modelling of nitrogen leaching from experimental onion field under drip fertigation, Agric. Water Manag., 89, 15–28, 2007.
2. Bumgarner, J., and J.E. McCray, Estimating biozone hydraulic conductivity in wastewater soil-infiltration systems using inverse numerical modeling, Water Res., 41, 2349–2360, 2007.
3. Dahiya, R., J. B. S. Jhorar, R. S. Malik, J. Ingwersen, and T. Streck, Simulation of water and heat transport in drip-irrigated sandy soil under mulched conditions, J. Indian Soc. Soil Sci., 55(3), 2007.
4. Fallow, D. J., D. M. Brown, J. D. Lauzon, and G. W. Parkin, Risk assessment of unsuitable winter conditions for manure and nutrient application across Ontario, J. Environ. Qual., 36, 31-43, 2007.
5. Franklin, M., H. Fernandes, M. Th. van Genuchten, and E. Vargas, Application of water flow and geochemical models to support the remediation of acid rock drainage from the uranium mining site of Poços de Caldas, Brazil, Proceedings of the 11th International Conference on Environmental Remediation and Radioactive Waste Management, ICEM2007, ICEM07-7346, September 2-6, 2007, Oud Sint-Jan Hospital Conference Center, Bruges, Belgium, pp. 8, 2007.
6. Göbel, P., C. Dierkes, H. Kories, J. Meßer, E. Meißner, W. G. Coldewey, Einfluss von Gründächern und Regenwassernutzungen auf Wasserhaushalt und Grundwasserstand in Siedlungen, Grundwasser – Zeitschrift der Fachsektion Hydrogeologie, 12, 189–200, 2007.
7. Haydar, M. M., and M. V. Khire, Leachate recirculation using permeable blankets in engineered landfills, Journal of Geotechnical And Geoenvironmental Engineering, 133(4), 360-371, 2007.
8. Heatwole, K. K., and J. E. McCray, Modeling potential vadose-zone transport of nitrogen from onsite wastewater systems at the development scale, J. Contam. Hydrol., 91, 184-201, 2007.
9. Heinse, R., S. B. Jones, S. L. Steinberg, M. Tuller, and D. Or, Measurements and modeling of variable gravity effects on water distribution and flow in unsaturated porous media, doi:10.2136/vzj2006.0105, Vadose Zone J., 6, 713–724, 2007.
10. Henry, E. J., Analytical and numerical modeling assessment of capillary barrier performance degradation due to contaminant-induced surface tension reduction, J. Geotechechnical And Geoenvironmental Engineering, 133(2), 231-236, 2007.
11. Hoepfner, U., Final covering of the Ronneburg uranium mining site, ICEM'07 - The 11th International Conference on Environmental Remediation and Radioactive Waste Management, September 2-6, 2007, Bruges, Belgium, pp. 5, 2007.
12. Kampf, S. K., and S. J. Burges, Parameter estimation for a physics-based distributed hydrologic model using measured outflow fluxes and internal moisture states, Water Resources Research, 43(12), Art. No. W12414, 2007.
13. Khire, M. V., and M. Mukherjee, Leachate injection using vertical wells in bioreactor landfills, Waste Management, 27(9), 1233-1247, 2007.
14. Krause, S. and A. Bronstert, The impact of groundwater–surface water interactions on the water balance of a mesoscale lowland river catchment in northeastern Germany, Hydrological Processes, 21, 169–184, 2007.
15. Lai, J., and L. Ren, Assessing the size dependency of measured hydraulic conductivity using double-ring infiltrometers and numerical simulation, doi:10.2136/sssaj2006.0227, Soil Sci. Soc. Am. J., 71, 1667–1675, 2007.
16. Lazarovitch, N., A. W. Warrick, A. Furman, and J. Šimůnek, Subsurface water distribution from drip irrigation described by moment analyses, Vadose Zone Journal, 6(1), 116-123, 2007.
17. Lazarovitch, N., A. Ben-Gal, J. Šimůnek, and U. Shani, Uniqueness of soil hydraulic parameters determined by a combined Wooding inverse approach, Soil Science Society of America Journal, 71(3), doi:10.2136/sssaj2005.0420, 860-865, 2007.
18. Mailhol, J. C., D. Crevoisier, and K. Triki, Impact of water application conditions on nitrogen leaching under furrow irrigation: Experimental and modeling approaches, Agricultural Water Management, 87(3), 275-284, 2007.
19. Mertens, J., J. Diels, J. Feyen, and J. Vanderborght, Numerical analysis of passive capillary wick samplers prior to field installation, Soil Sci. Soc. Am. J., 71(1), 35-42, 2007.
20. Ndiaye, B., J. Molenat, V. Hallaire, C. Gascuel, and Y. Hamon, Y., Effects of agricultural practices on hydraulic properties and water movement in soils in Brittany (France), Soil & Tillage Research, 93(2), 251-263, 2007.
21. Provenzano, G., Using HYDRUS-2D Simulation Model to Evaluate Wetted Soil Volume in Subsurface Drip Irrigation Systems, Journal of Irrigation and Drainage Engineering, 133(4), 342–349, 2007.
22. Radcliffe, D. E., and L. T. West, Modeling long term acceptance rates for OWMSs. In K. Mancl (ed.) Individual and Small Community Sewage Syst. Conf. Proc., 11th, Warwick, RI. 20–24 Oct. 2007. ASABE Publ. 701P1107. Am. Soc. Agric. Biol. Eng., St. Joseph, MI, 2007.
23. Rajmohan, N., and L. Elango, Mobility of major ions and nutrients in the unsaturated zone during paddy cultivation: a field study and solute transport modelling approach, Hydrological Processes, 21(20), 2698-2712, 2007.
24. Saintenoy A., S. Schneider and P. Tucholka, Evaluating Ground-Penetrating Radar use for water infiltration monitoring, Proceedings of the 4rth International Workshop on Advanced Ground Penetrating Radar, Napoli, Italia, June 27-29, 2007.
25. Saintenoy A., S. Schneider et P. Tucholka, Suivi de l'évolution d'un front d'humidification à l'aide de mesures de radar de sol, Actes du 6ème Colloque de Géophysique des Sols et des Formations Superficielles GEOFCAN, Orléans, France, Sept. 25-26, 2007.
26. Saito, H., J. Šimůnek, J. W. Hopmans, and A. Tuli, Numerical evaluation of the heat pulse probe for simultaneous estimation of water fluxes and soil hydraulic and thermal properties, Water Resour. Res., 43, W07408, doi:10.1029/2006WR005320, 2007.
27. Sansoulet, J. Water flow and transport of potassium and nitrate ions in a variable charge soil under rainfall redistributed by crop. Experimental and modeling study in a banana plantation fertilized on an andosol, PhD thesis, Institut National Agronomique, Paris, Grignon, 136 pp., 2007.
28. Schwärzel, K., and J. Punzel, Hood infiltrometer—a new type of tension infiltrometer, doi:10.2136/sssaj2006.0104, Soil Sci. Soc. Am. J., 71, 1438–1447, 2007.
29. Tillman, F. D., and J. W. Weaver, Temporal moisture content variability beneath and external to a building and the potential effects on vapor intrusion risk assessment, Science Of The Total Environment, 379(1), 1-15, 2007.
30. Warrick, A. W., and N. Lazarovitch, Infiltration from a strip source, Water Resour. Res., 43, W03420, doi:10.1029/2006WR004975, 2007.
31. Warrick, A. W., N. Lazarovitch, A. Furman; and D. Zerihun, Explicit infiltration function for furrows, Journal of Irrigation and Drainage Engineering, 133(4), 307-313, 2007.
32. Winiarski, T., R. Angulo-Jaramillo, L. Lassabatère, G. Bièvre, J.-F. Buoncristiani, J.-S. Dubé, A. Mesbah, And H. Cazalets, Hydrogeophysical study of the heterogeneous unsaturated zone of a stormwater infiltration basin, BLPC (British Library Public Catalog), 268-269, 173-192, 2007.
33. Wöhling, Th., G. H. Schmitz, A Physically Based Coupled Model for Simulating 1D Surface - 2D Subsurface Flow and Plant Water Uptake in Irrigation Furrows. I: Model Development, Journal of Irrigation and Drainage Engineering, 133(6), 538-547, 2007.
34. Wöhling, Th., J. C. Mailhol, A Physically Based Coupled Model for Simulating 1D Surface - 2D Subsurface Flow and Plant Water Uptake in Irrigation Furrows. II: Model Test and Evaluation, Journal of Irrigation and Drainage Engineering, 133 (6), 548-558, 2007.
35. Yoon, H., Y. Hyun, and Kang-Kun Lee, Forecasting solute breakthrough curves through the unsaturated zone using artificial neural networks, J Hydrology, 335(1-2), 68-77, 2007.
36. Zakerinia, M., F. Abbasi, and T.Sohrabi, Evaluating temporal variations of soil hydraulic conductivity using inverse optimization technique, Journal of Agricultural Engineering Research, 8(3), Autumn, 2007.
37. Zhou, Q., S. Kang, L. Zhang, and F. Li, Comparison of APRI and Hydrus-2D models to simulate soil water dynamics in a vineyard under alternate partial root zone drip irrigation, Plant Soil, 291, 211–223, 2007, 2007.
38. Zhu, J., M. H. Young, and M. Th. van Genuchten, Upscaling Schemes and Relationships for the Gardner and van Genuchten Hydraulic Functions for Heterogeneous Soils, Vadose Zone Journal, 6, 186–195, 2007.

2006

1. Abichou T., X. L. Liu, and K. Tawfiq, Design considerations for lysimeters used to evaluate alternative earthen final covers, Journal Of Geotechnical And Geoenvironmental Engineering , 132(12), 1519-1525, 2006.
2. Assouline, S., M. Möller, S. Cohen, M. Ben-Hur, A. Grava, K. Narkis, and A. Silber, Soil-plant system response to pulsed drip irrigation and salinity: bell pepper case study, Soil Sci. Soc. Am. J., 70, 1556–1568, 2006.
3. Beal C. D., T. Gardner, D. W. Rassam, A. M. Vieritz, and N. W. Menzies, Effluent flux prediction in variably saturated soil zones within a septic tank-soil absorption trench, Australian Journal Of Soil Research, 44(7), 677-686, 2006.
4. Blonquist Jr., J. M., S. B. Jones, and D. A. Robinson, Precise irrigation scheduling for turfgrass using a subsurface electromagnetic soil moisture sensor, Agricultural Water Management, 84(1-2), 153-165, 2006.
5. Boivin, A., J. Šimůnek, M. Schiavon and M. Th. van Genuchten, A comparison of pesticides transport processes in three contrasting field soils using Hydrus-2D, Vadose Zone Journal, 5, 838–849, 2006.
6. Buczko, U, and H. H. Gerke, Modeling two-dimensional water flow and bromide transport in a heterogeneous lignitic mine soil, Vadose Zone Journal, 5, 14–26, 2006.
7. Chahinian N., M. Voltz, R. Moussa, et al., Assessing the impact of the hydraulic properties of a crusted soil on overland flow modelling at the field scale, Hydrological Processes, 20(8), 1701-1722, 2006.
8. Cook, F. J., P. Fitch, P. J. Thorburn, P. B. Charlesworth, and K. L. Bristow, Modelling trickle irrigation: Comparison of analytical and numerical models for estimation of wetting front position with time, Environ. Modelling & Software, 21, 1353-1359, 2006.
9. Dann R. L., M. E. Close, R. Lee, et al., Impact of data quality and model complexity on prediction of pesticide leaching, Journal Of Environmental Quality, 35,(2), 628-640, 2006.
10. Fernandez-Galvez J., L. P. Simmonds, Monitoring and modelling the three-dimensional flow of water under drip irrigation, Agricultural Water Management, 83(3), 197-208, 2006.
11. Gärdenäs, A., J. Šimunek, N. Jarvis, and M. Th. van Genuchten, Two-dimensional modelling of preferential water flow and pesticide transport from a tile-drained field, J. Hydrology, 329, 647-660, 2006.
12. Germann P. F. and D. Hensel, Poiseuille flow geometry inferred from velocities of wetting fronts in soils, Vadose Zone Journal , 5(3), 867-876, 2006.
13. Hanson, B. R., J. Šimůnek, and J. W. Hopmans, Numerical modeling of urea-ammonium-nitrate fertigation under microirrigation, Agric. Water Management, 86, 102-113, 2006.
14. Henry, E. J., and J. E. Smith, Numerical demonstration of surfactant concentration-dependent capillarity and viscosity effects on infiltration from a constant flux line source, J. of Hydrology, 329(1-2), 63-74, 2006.
15. Hesterberg, D., J. A., De Vos, and P. A. C. Raats, Chemistry of subsurface drain discharge from an agricultural polder soil, Agric. Water Manag., 86, 220–228, 2006.
16. Hoepfner, U., Das „Speicher- und Verdunstungskonzept“ alternativer Oberflächenabdeckungen: Messung und Simulation des Wasser- und Gashaushaltes und sein Einsatz bei der Sanierung der Wismut-Altlasten. Dissertation, Fakultät für Geowissenschaften, Ruhr-Universität Bochum, pp. 760, in German, 2006.
17. Hoepfner, U., Interflow in Recultivation Layers – Simulation with HYDRUS_2D. In: Schoenherr, J., Baumert, R. & Müller, M. (Hrsg.): Landfill Workshop Zittau - Liberec 2005. Dimensioning Landfill Surface Liner Systems Using Water Balance Models, Wissenschaftliche Berichte, Hochschule Zittau/Görlitz, Vol. 86, 33-40, 2006.
18. Hoepfner, U. and P. Schneider, Langzeitmonitoring von Abdeckungen an Wismut-Sanierungsstandorten, In: Schoenherr, J., Baumert, R. & Müller, M. (Hrsg.): Deponieworkshop Zittau - Liberec 2006. Langzeitverhalten von Deponieabdichtungen, Wissenschaftliche Berichte, Hochschule Zittau/Görlitz, Vol. 91, 113-122, in German, 2006.
19. Keim R. F., H. J. T. V. Meerveld, J. J. McDonnell, A virtual experiment on the effects of evaporation and intensity smoothing by canopy interception on subsurface stormflow generation, Journal Of Hydrology, 327(3-4), 352-364, 2006.
20. Köhne, S., B. Lennartz, J. M. Köhne, and J. Šimůnek, Bromide transport at a tile-drained field site: experiment, one- and two-dimensional equilibrium and non-equilibrium numerical modeling, J. Hydrology, 321(1-4), 390-408, 2006.
21. McCoy, Ed. and Kevin McCoy, Dynamics of water flow in putting greens via computer simulation, USGA Turfgrass and Environmental Research Online, 5(17), 1-15, 2006.
22. Morari F., Drainage flux measurement and errors associated with automatic tension-controlled suction plates, Soil Sci. Soc. Am. J., 70(6), 1860-1871, 2006.
23. Mortensen, A, P., J. W. Hopmans, Y. Mori, and J. Šimůnek, Inverse modeling of water, heat, and solute transport in the vadose zone using data collection with a multi-functional heat pulse technique, Advances in Water Resources, 29, 250-267, 2006.
24. Pang, L., C. Nokes, J. Šimůnek, H. Kikkert, and R. Hector, Modeling the impact of clustered septic tank systems on groundwater quality, Vadose Zone Journal, 5, 599-609, 2006.
25. Phillips I. R., Modelling water and chemical transport in large undisturbed soil cores using Hydrus-2D, Australian Journal Of Soil Research, 44(1), 27-34, 2006.
26. Popova Z., D. Crevoisier, P. Ruelle, and J. C. Mailhol, Assessment and simulation of water and nitrogen transfer under furrow irrigation Part I. Application of Hydrus2D model to simulate water transfer, Ecology in future. Bulgarian Journal of ecological science, V(3), 3-16, 2006.
27. Popova Z., D. Crevoisier, P. Ruelle, and J. C. Mailhol, Assessment and simulation of water and nitrogen transfer under furrow irrigation Part II. Application of Hydrus2D model to simulate nitrogen transfer, Ecology in future, Bulgarian Journal of ecological science, V(3), 17-26, 2006.
28. Ramos T. B., M. C. Goncalves, J. C. Martins, et al., Estimation of soil hydraulic properties from numerical inversion of tension disk infiltrometer data, Vadose Zone Journal, 5(2), 684-696, 2006.
29. Rocha D, F. Abbasi, and J. Feyen, Sensitivity analysis of soil hydraulic properties on subsurface water flow in furrows, J. of Irrigation and Drainage Engineering-ASCE, 132(4), 418-424, 2006.
30. Sleep, B. E., Ch. D. Shackelford, and J. C. Parker, Modeling of Fluid Transport through Barriers, In: Chien, C. C., H. I. Inyang, and L. G. Everett, Barrier Systems for Environmental Contamination Containment and Treatment, Chapter 2, CRC Taylor and Francis, 71-142, 2006.
31. Sansoulet, J., Cabidoche, Y.M., Cattan P., Modeling spatially distributed water fluxes in an Andosol under banana plant, World Congress of Soil Science, International Soil Science Society, July 9-15 2006, Philadelphia, USA, 2006.
32. Stillman J. S., N. W. Haws, R. S. Govindaraju, and P. Suresh C. Rao, A semi-analytical model for transient flow to a subsurface tile drain, J. of Hydrology, 317(1-2), 49-62, 2006.
33. Vandenhove, H., L. Sweeck, D. Mallants, H. Vanmarcke, A. Aitkulov, O. Sadyrov, M. Savosin, B. Tolongutov, M. Mirzachev, J. J. Clerc, H. Quarch, and A. Aitaliev, Assessment of radiation exposure in the uranium mining and milling area of Mailuu Suu, Kyrgyzstan, Journal of Environmental Radioactivity, 88(2), 118-139, 2006.
34. Weihermuller, L., R. Kasteel, and H. Vereecken, Soil heterogeneity effects on solute breakthrough sampled with suction cups: Numerical simulations, Vadose Zone Journal, 5(3): 886-893, 2006.

2005

1. Apul, D., K. Gardner, T. Eighmy, E. Lindner, T. Frizzell, and R. Roberson, Probabilistic modeling of one-dimensional water movement and leaching from highway embankments containing secondary materials, Environmental Engineering Science, 22(2), 156-205, 2005.
2. Ciglasch, H., W. Amelung, S. Totrakool, And M. Kaupenjohann, Water flow patterns and pesticide fluxes in an upland soil in northern Thailand, Europ. J. Soil Sci., 56, 765–777, 2005.
3. Coquet, Y., J. Šimůnek, C. Coutadeur, M. Th. van Genuchten, V. Pot, and J. Roger-Estrade, Water and solute transport in a cultivated silt loam soil: 2. Numerical analyses, Vadose Zone Journal, 4, 587-601, 2005.
4. Fala, O., J. Molson, M. Aubertin, and B. Bussière, Numerical Modelling of Flow and Capillary Barrier Effects in Unsaturated Waste Rock Piles, Mine Water and the Environment, 24(4), 172–185, 2005.
5. Gärdenäs, A., Hopmans, J. W., B. R. Hanson, and J. Šimůnek, Two-dimensional modeling of nitrate leaching for various fertigation scenarios under micro-irrigation, Agric. Water Management, 74, 219-242, 2005.
6. Hansson, K., L.-Ch. Lundin, and J. Šimůnek, Modeling water flow patterns in flexible pavements, Transportation Research Record: Journal of the Transportation Research Board, 1936, 133-141, 2005.
7. Hassan, G. N. Persaud, and R. B. Reneau, Jr., Utility of Hydrus-2D in modeling profile soil moisture and salinity dynamics under saline water irrigation of soybean, Soil Science, 170(1), 28-37, 2005.
8. Hassan, G., R. B. Reneau, Jr, C. Hagedorn, and M. Saluta, Modeling water flow behavior where highly treated effluent is applied to soil at varying rates and dosing frequencies, Soil Science, 170(9), 692-706, 2005.
9. Hoepfner, U. and H. Zepp, Das Konzept der ET-Caps – Eine Alternative zur Oberflächenabdichtung? Mitt. Deutsche Bodenkundliche Gesellschaft, Vol. 107, 481–482, in German, 2005.
10. Haydar M. M., and M. V. Khire, Leachate recirculation using horizontal trenches in bioreactor landfills, Journal of Geotechnical and Geoenvironmental Engineering, 131(7), 837-847, 2005.
11. Langergraber, G. and J. Šimůnek, Modeling Variably-Saturated Water Flow and Multi-Component Reactive Transport in Constructed Wetlands, Vadose Zone Journal, 4, 924-938, 2005.
12. Lazarovitch, N., J. Šimůnek, and U. Shani, System dependent boundary condition for water flow from subsurface source, Soil Sci. Soc. Am. J., 69(1), 46-50, 2005.
13. Li, J., J. Zhang, and M. Rao, Water flow and nitrate transport under surface drip fertigation, Transactions of the ASAE, 48(2), 627-637, 2005.
14. Meadows, D. G., M. H. Young, and E. V. McDonald, A laboratory method for determining the unsaturated hydraulic properties of soil peds, Soil Sci. Soc. Am. J., 69, 807–815, 2005.
15. Mermoud, A., T. D. Tamini, and H. Yacouba, Impacts of different irrigation schedules on the water balance components of an onion crop in a semi-arid zone, Agricultural Water Management, 77(1-3), 282-295, 2005.
16. Mertens, J. , G. F. Barkle, and R. Stenger, Numerical analysis to investigate the effects of the design and installation of equilibrium tension plate lysimeters on leachate volume, Vadose Zone Journal, 4, 488–499, 2005.
17. Molson, J. W., O. Fala, M. Aubertin and B. Bussière, Numerical simulations of pyrite oxidation and acid mine drainage in unsaturated waste rock piles, J Contam. Hydrology, 78(4), 343-371, 2005.
18. Muttiah R. S., J. D. White, J. R. Duke, et al., Estimation of source water to cedar elm in a central Texas riparian ecosystem, Hydrological Processes, 19(2), 475-491, 2005.
19. Nolan, B. T., E. R. Bayless, Ch. T. Green, S. Garg, F. D. Voss, D. C. Lampe, J. E. Barbash, P. D. Capel, and B. A. Bekins, Evaluation of Unsaturated-Zone Solute-Transport Models for Studies of Agricultural Chemicals, U.S. GEOLOGICAL SURVEY, Open-File Report 2005-1196, http://pubs.usgs.gov/of/2005/1196/ofr20051196.pdf, 2005.
20. Radcliffe D. E., L. T. West, and J. Singer, Gravel effect on wastewater infiltration from septic system trenches, Soil Science Society of America Journal, 69(4), 1217-1224, 2005.
21. Starr J. L., A. M. Sadeghi, Y. A. Pachepsky, Monitoring and modeling lateral transport through a large in situ chamber, Soil Science Society of America Journal, 69(6), 1871-1880, 2005.
22. Torkzaban S. and Hassanizadeh S. M. (eds.), Proceedings of Workshop on HYDRUS Applications, Department of Earth Sciences, Utrecht University, The Netherlands, ISBN 90-39341125, October 19, 2005. PDF document, size 4MB.
23. Weihermuller L., R. Kasteel, J. Vanderborght, T. Putz, and H. Vereecken, Soil water extraction with a suction cup: Results of numerical simulations, Vadose Zone Journal, 4(4), 899-907, 2005.

2004

1. Abbasi F., J. Feyen, and M. Th. van Genuchten, Two-dimensional simulation of water flow and solute transport below furrows: Model calibration and validation, Journal of Hydrology, 290(1-2), 63-79, 2004.
2. Beggs, R. A., G. Tchobanoglous, D. Hills, and R. W. Crites, Modeling subsurface drip application of onsite wastewater treatment system effluent, in On-Site Wastewater Treatment X, Proceedings of the Tenth National Symposium on Individual and Small Community Sewage Systems, ASAE, March 21-24, 2004, Sacramento, California, 92-103, 2004.
3. Ben-Gal A, N. Lazarovitch, and U. Shani, Subsurface drip irrigation in gravel-filled cavities, Vadose Zone Journal, 3(4), 1407-1413, 2004.
4. Bradford, S. A., M. Bettehar, J. Šimůnek, and M. Th. van Genuchten, Straining and attachment of colloids in physically heterogeneous porous media, Vadose Zone Journal, 3(2), 384-394, 2004.
5. Coquet, Y., C. Desbourdes-Coutadeur, P. Vachier, J. Šimůnek, and J. Roger-Estrade, Influence de la variabilité spatiale de la structure des sols cultivés ser les transferts de l’eau et de l’ion bromure, Étude et Gestion des Sols, 11(1), 81-92, 2004.
6. Göbel, P., H. Stubbe, M. Weinert, J. Zimmermann, S. Fach, C. Dierkes, H. Kories, J. Messer, V. Mertsch, W. F. Geiger, W. G. Coldewey, Near-natural stormwater management and its effects on the water budget and groundwater surface in urban areas taking account of the hydrogeological conditions, J. Hydrology, 299, 267-283, 2004.
7. Haydar, M., and M. Khire, Numerical evaluation of heterogeneity and anisotropy of waste properties on leachate recirculation in bioreactor landfills, The Journal of Solid Waste Management & Technology, 30(4), 233-243, 2004.
8. Haws N. W., and P. S. C. Rao, The effect of vertically decreasing macropore fractions on simulations of non-equilibrium solute transport, Vadose Zone Journal, 3(4), 1300-1308, 2004.
9. Haws N. W., B. S. Das, P. S. C. Rao, Dual-domain solute transfer and transport processes: evaluation in batch and transport experiments, Journal of Contaminant Hydrology, 75(3-4), 257-280, 2004.
10. Jiusheng Li, Jianjun Zhang and Minjie Rao, Wetting patterns and nitrogen distributions as affected by fertigation strategies from a surface point source, Agricultural Water Management, 67(2), 89-104, 2004.
11. Kaiser, K., G. Guggenberger, and L. Haumaier, Changes in dissolved lignin-derived phenols, neutral sugars, uronic acids, and amino sugars with depth in forested Haplic Arenosols and Rendzic Leptosols, Biogeochemistry, 70, 135–151, 2004.
12. Lischeid, G., and J. Langusch, Comparative simulation of the nitrogen dynamics using the INCA model and a neural network analysis: Implications for improved nitrogen modeling, Hydrology and Earth System Sciences, 8(4), 742-750, 2004.
13. Mailik, R. S., B. S. Jhorar, and R. K. Jhohar, Modelling groundwater recharge from an ASR well. In. Jhorar, R. H., R. S. Malik, B. S. Malik and T. Streck (eds.), Proc. of workshop on Groundwater recharge and management through ASR technology, Hisar, India, 15-17 April, CCS Harayana Agricultural Univeristy, Hisar, India, 2004.
14. Manglik, A., S. N. Rai, and V. S. Singh, Modelling of aquifer response to time varying recharge and pumping from multiple basins and wells, J. Hydrology, 292, 23-29, 2004.
15. Radcliffe, D. E., L. T. West, and J. Singer, Comparison of chamber and conventional on-site systems, in On-Site Wastewater Treatment X, Proceedings of the Tenth National Symposium on Individual and Small Community Sewage Systems, ASAE, March 21-24, 2004, Sacramento, California, 2004.
16. Schot, P. P., S. C. Dekker and A. Poot, The dynamic form of rainwater lenses in drained fens, J. of Hydrology, 293(1-4), 74-84, 2004.
17. Schlegel P., B. Huwe, and W. G. Teixeira, Modelling species and spacing effects on root zone water dynamics using Hydrus-2D in an Amazonian agroforestry system, Agroforestry Systems, 60(3), 277-289, 2004.
18. Skaggs, T. H., T. J. Trout, J. Šimůnek, and P. J. Shouse, Comparison of Hydrus-2D simulations of drip irrigation with experimental observations, J. of Irrigation and Drainage Engineering, 130(4), 304-310, 2004.
19. Wöhling, Th., G. H. Schmitz; and J.-C. Mailhol, Modeling two-dimensional infiltration from irrigation furrows, Journal of Irrigation and Drainage Engineering, 130(4), 296–303, 2004.
20. Wöhling, Th., R. Singh, and G. H. Schmitz, Physically based modeling of interacting surface–subsurface flow during furrow irrigation advance, Journal of Irrigation and Drainage Engineering, 130(5), 349-356, 2004.
21. Young, M. H., E. V. McDonald, T. G. Caldwell, S. G. Benner, and D. G. Meadows, Hydraulic properties of a desert soil chronosequence in the Mojave Desert, USA, Vadose Zone J., 3, 956-963, 2004.

2003

1. Abbasi, F., J. Šimůnek, J. Feyen, M. Th. van Genuchten, P. J. Shouse, Simultaneous inverse estimation of soil hydraulic and solute transport parameters from transient field experiments: Homogeneous soil, Transactions of ASAE, 46(4), 1085-1095, 2003.
2. Abbasi, F., D. Jacques, J. Šimůnek, J. Feyen, and M. Th. van Genuchten, Inverse estimation of the soil hydraulic and solute transport parameters from transient field experiments: Heterogeneous soil, Transactions of ASAE, 46(4), 1097-1111, 2003.
3. Basile, B., G. Mele, and F. Terribile, Soil hydraulic behaviour of a selected benchmark soil involved in the landslide of Sarno 1998, Geoderma, 117 , 331–346, 2003.
4. Beach, D. N. H. and J. E. McCray, Numerical modeling of unsaturated flow in wastewater soil absorption systems, Ground Water Monitoring and Remediation, 23, 64-72, 2003.
5. Ben-Gal A., and L. M. Dudley, Phosphorus availability under continuous point source irrigation, Soil Science Society of America Journal, 67(5), 1449-1456, 2003.
6. Cote, C. M., K. L. Bristow, P. B. Charlesworth, F. J. Cook, and P. J. Thorburn, Analysis of soil wetting and solute transport in subsurface trickle irrigation, Irrig. Sci., 22, 143–156, DOI 10.1007/s00271-003-0080-8, 2003.
7. Close M. E., L. Pang, G. N. Magesan, et al., Field study of pesticide leaching in an allophanic soil in New Zealand. 2: Comparison of simulations from four leaching models, Australian Journal of Soil Research, 41(5), 825-846, 2003.
8. Jalbert, M., and J. H. Dane, A handheld device for intrusive and nonintrusive field measurements of air permeability, Vadose Zone J., 2, 611-617, 2003.
9. Joris, I., and J. Feyen, Modelling water flow and seasonal soil moisture dynamics in an alluvial groundwater-fed wetland, Hydrology and Earth System Sciences, 7(1), 57-66, 2003.
10. Jury, W. A., Z. Wang and A. Tuli, A conceptual model of unstable flow in unsaturated soil during redistribution, Vadose Zone J., 2, 61-67, 2003.
11. Kampf, M., T. Holfelder, and H. Montenegro, Identification and parameterization of flow processes in artificial capillary barriers, Water Resour. Res., 39(10), 2.1-2.10, 2003.
12. MDH Engineered Solutions Corp., Evaluation of computer models for predicting the fate and transport of salt in soil and groundwater Phase I Report, prepared for Science and Standards Branch, Alberta Environment, April 2003.
13. Mmolawa K, and D. Or, Experimental and numerical evaluation of analytical volume balance model for soil water dynamics under drip irrigation, Soil Science Society of America Journal, 67(6), 1657-1671, 2003.
14. Schmalz B., B. Lennartz, and M. Th. van Genuchten, Analysis of unsaturated water flow in a large sand tank, Soil Science, 168(1), 3-14, 2003.
15. Tuteja N. K., G. Beale, W. Dawes, J. Vaze, B. Murphy, P. Barnett, A. Rancic, R. Evans, G. Geeves, D. W. Rassam, and M. Miller, Predicting the effects of land use change on water and salt balance - a case study of a catchment affected by dryland salinity in NSW, Australia, Journal of Hydrology, 283(1-4), 67-90, 2003.
16. Wauchope, R. D., L. A. Ahuja, J. G. Arnold, R. Binger, R. Lawrence, M. Th. van Genuchten, and L. D. Adams. Software for pest-management science: Computer models and databases from the United States Department of Agriculture - Agricultural Research Service, Pest Manag. Sci., 59, 691-698, 2003.

2002

1. Assouline, S., The effects of microdrip and conventional drip irrigation on water distribution and uptake, Soil Sci. Soc. Am. J., 66, 1630-1636, 2002.
2. Bristow, K. L., J. W. Hopmans, C. M. Cote, P. B. Charlesworth, P. J. Thorburn, and F. J. Cook, Development of improved water and nutrient management strategies through strategic modeling, in Proc. of 17th WCSS, Thailand, pp 14-21, 2002.
3. Chabot R, S. Bouarfa, D. Zimmer, C. Chaumont, and C. Duprez, Sugarcane transpiration with shallow water-table: sap flow measurements and modeling, Agricultural Water Management, 54(1), 17-36, 2002.
4. De Vos, J. A., P. A. C. Raats, and R. A. Feddes, Chloride transport in a recently reclaimed Dutch polder, J. of Hydrology, 257(1-4), 59-77, 2002. **
5. Ferré, T. P.A., H. H., Nissen, and J. Šimůnek, The effect of the spatial sensitivity of TDR on inferring soil hydraulic properties from water content measurements made during the advance of a wetting front, Vadose Zone Journal, 1, 281-288, 2002.
6. Henry, E. J., J. E. Smith, and A. W. Warrick, Two-dimensional modeling of flow and transport in the vadose zone with surfactant-induced flow, Water Resour. Res., 38(11), 1251, doi:10.1029/2001WR000674, 2002.
7. Hopmans, J. W., J. Šimůnek, and K. L. Bristow, Indirect estimation of soil thermal properties and water flux from heat pulse measurements: Geometry and Dispersion effects, Water Resour. Res., 38(1), 10.1029/2000WR000071, 2002.
8. Langusch, J.-J., and E. Matzner, N fluxes in two nitrogen saturated forested catchments in Germany: dynamics and modelling with INCA, Hydrology and Earth System Sciences, 6(3), 383–394, 2002.
9. Öztekin, T., Simulating Water Flow to a Subsurface Drain in a Layered Soil, Turk. J. Agric. For., 26, 179-185, 2002.
10. Rassam, D. W., and F. J. Cook, Numerical simulations of water flow and solute transport applied to acid sulfate soils, J. of Irrig. and Dran., 128(2), 107-115, 2002.
11. Schijven, J., and J. Šimůnek, Kinetic modeling of virus transport at field scale, J. of Contam. Hydrology, 55(1 2), 113 135, 2002. **
12. Schlegel, P. Water Dynamics in the Root Zone of an Agroforestry System near Manaus, Amazonia - A Model Study With Hydrus 2D, PhD thesis, Lehrstuhl fuur Bodenkunde und Bodengeographie, Abteilung Bodenphysik, Universitat Bayreuth, pp. 157, 2002.
13. Schmitz, G. H., N. Schutze, and U. Petersohn, New strategy for optimizing water application under trickle irrigation, J. of Irrigation and Drainage Engineering, 128(5), 287-297, 2002.
14. Silliman, S., B. Berkowitz, J. Šimůnek, and M. Th. van Genuchten, Fluid flow and chemical migration within the capillary fringe, Ground Water, 40(1), 76-84, 2002.

2001

1. Cooke, R. A., S. Badiger and A. M. García, Drainage equations for random and irregular tile drainage systems, Agricultural Water Manegement, 48(3), 207-224, 2001.
2. Das, B. S., J. M. H. Hendrickx, and B. Botchers, Modeling transient water distribution around landmines in bare soils, Soil Sci., 166(3), 163-173, 2001. *
3. Fennemore, G. G., A. Davis, L. Gross, and A. W. Warrick, A rapid screening-level method to optimize location of infiltration ponds, Groundwater, 39(2), 230-238, 2001. *
4. Kao, C., S. Bouarfa, and D. Zimmer, Steady state analysis of unsaturated flow above a shallow water-table aquifer drained by ditches, J. of Hydrology, 250(1-4), 122-133, 2001. *
5. Klepsch, S., M. H. Gerzabek, W. Loiskandl, Short communication evaluation of migration models in the unsaturated soil zone, J. of Plant Nutrition and Soil Sci., 164(6), 611-612, 2001.
6. Langergraaber, G., Development of a simulation tool for subsurface flow constructed wetlands, PhD theses, Band 169, Wien, pp. 207, 2001.
7. Mailhol J. C., P. Ruelle P, and I. Nemeth, Impact of fertilisation practices on nitrogen leaching under irrigation, Irrigation Science, 20(3), 139-147, 2001.
8. Rupp, D. E., J. S. Selker, and J. Šimůnek, A modification to the Bouwer and Rice method of slug-test analysis for large-diameter, hand-dug wells, Groundwater, 39(2), 308-314, 2001. *
9. Sommer, R., Water and nutrient balance in deep soils under shifting cultivation with and without burning in the Eastern Amazon, PhD theses, Cuvillier Verlag Göttingen, ISBN 3-89873-059X, Göttingen, 2001.
10. Vanderborght, J., Concentration variance and spatial covariance in second-order stationary heterogeneous conductivity fields, Water Resour. Rer., 37(7), 1893-1912, 2001. *
11. Vrugt, J. A., J. W. Hopmans, and J. Šimůnek, Calibration of a two-dimensional root water uptake model for a sprinkler-irrigated almond tree, Soil Sci. Soc. Am. J., 65(4), 1027-1037, 2001. *+
12. Vrugt, J.A., M. T. van Wijk, J. W. Hopmans, and J. Šimůnek, One-, two-, and three-dimensional root water uptake functions for transient modeling, Water Resour. Res., 37(10), 2457-2470, 2001. *

2000

1. Chang, Shih-Chieh, and E. Matzner, The effect of beech stemflow on spatial patterns of soil solution chemistry and seepage fluxes in a mixed beech/oak stand, Hydrological Processes, 14, 135-144, 2000. *
2. Diodato, D. M., Review: Hydrus-2D, Computer Spotlights, Ground Water, 38(1), 10-11, 2000.
3. De Vos, J. A., D. Hesterberg, and P. A. C. Raats, Nitrate leaching in a tile-drained silt loam soil, Soil Sci. Soc. Am. J., 64, 517-527, 2000. **
4. Kämpf, M. Fließprozesse in Kapillarsperren zur Oberflächenabdichtung von Deponien und Altlasten – Grundlagen zur hydrulischen Bemessung, PhD Thesis, Mitteilungen Heft 109, Inst. Für Wasserbau und Wasserwirtschaft, Technical University Darmstadt, Germany, pp 146, 2000. *
5. Lee, T. M., Effects of nearshore recharge on groundwater interactions with a lake in mantled karst terrain, Water Resour. Rer., 36(8), 2167-2182, 2000. *
6. Pang, L., M. E. Close, J.P.C. Watt, and K. W. Vincent, Simulation of picloram, atrazine, and simazine leaching through two New Zealand soils and into groundwater using Hydrus-2D, J. of Contam. Hydrology, 44(1), 19-46, 2000. **+
7. Wilson, G. V., D. M. Ely, S. L. Hokett, and D. R. Gillespie, Recharge from a subsidence crater at the Nevada test site, Soil Sci. Soc. Am. J., 64(5), 1560-1581, 2000. *
8. Yates, M. V., W. A. Jury, S. R. Yates, D. L. Anderson, L. M. Stark, and P. Sherblom, Measurement of virus and indicator survival and transport in the subsurface, AWWA Research Foundation and American Water Works Association, pp. 141, Denver, CO, 2000.

1999

1. de Vos, J. A., J. Šimůnek, and P. A. C. Raats, Identification of the hydraulic properties of a layered silt loam, in van Genuchten, M. Th., F. J. Leij, and L. Wu (eds.) Characterization and Measurement of the Hydraulic Properties of Unsaturated Porous Media, University of California, Riverside, CA, 783-798, 1999. **
2. Gee, G. W., W. H. Albright, G. V. Wilson, M. J. Fayer, and B. Ogan, Alternative Cover Assessment Project: Phase 1 Report, Desert Research Institute, 1999.
3. Inoue, M., J. Šimůnek, J. W. Hopmans, and V. Clausnitzer, Using a multi-step soil-water extraction technique for in-situ estimation of soil hydraulic properties, in van Genuchten, M. Th., F. J. Leij, and L. Wu (eds.) Characterization and Measurement of the Hydraulic Properties of Unsaturated Porous Media, University of California, Riverside, CA, 725-736, 1999. *+
4. Ishizaki, T., N. Kuchitsu, T. Nishiura, and J. Šimůnek, Analysis of water regime in historical brick buildings in Ayutthaya, Thailand, Science for Conservation, 38, 154-163, in Japanese with English summary, 1999.*
5. Jones, S. B. and D. Or, Microgravity effects on water flow and distribution in unsaturated porous media: Analyses of flow experiments, Water Resour. Rer., 35(4), 929-942, 1999. *
6. Kampf, M., T. Holfelder, and H. Montenegro, Inspection and numerical simulations of flow processes in capillary barrier cover systems, In: Holz, K. P., W. Bechteler, S. S. Y. Wang, and M. Kawahara, Advances in Hydro-Science and -Engeneering, Proc. of the 3.rd Int. Conf. On Hydro-Science and -Engineering, Brandenburg University, Cottbus, Germany, pp.13, 1998. *
7. Kodešová, R., M. M. Gribb, and J. Šimůnek, Use of the cone permeameter method to determine soil hydraulic properties, in van Genuchten, M. Th., F. J. Leij, and L. Wu (eds.) Characterization and Measurement of the Hydraulic Properties of Unsaturated Porous Media, University of California, Riverside, CA, 527-539, 1999. *+
8. Leij, F. J., J. Šimůnek, N. Toride, and T. Vogel, Mathematical solutions of the convection-dispersion equation, Chapter 10, In: Agricultural Drainage, Number 38 in the series Agronomy, Eds. J. van Schilfgaarde and W. Skaggs, 361-403, 1999. **
9. Mallants, D., G. Volckaert, and J. Marivoet, Sensitivity of protective barrier performance to changes in rainfall rate, Waste Management, 19, 467-475, 1999.*
10. Romano, C. G., E. O. Frind, and D. L Rudolph, Significance of unsaturated flow and seepage faces in the simulation of steady-state subsurface flow, Ground Water, 37(4), 625-632, 1999. *
11. Šimůnek, J., R. Kodešová, M. M. Gribb, and M. Th. van Genuchten, Estimating hysteresis in the soil water retention function from modified cone penetrometer test, Water Resour. Res., 35(5), 1329-1345, 1999. *+
12. Šimůnek, J., M. M. Gribb, J. W. Hopmans, and M. Th. van Genuchten, Estimating soil hydraulic properties from field data via inverse modeling, Proc. of the 2nd International Conference on Unsaturated Soils - UNSAT'98, Beijing, China, August 27-30, 515-520, 1998. *+
13. Stothoff, S. A., D. Orr, D. P. Groeneveld, and S. B. Jones, The effect of vegetation on infiltration in shallow soils underlain by fissured bedrock, J. of Hydrology, 218, 169-190, 1999. *
14. Šimůnek, J., and M. Th. van Genuchten, Using the Hydrus-1D and Hydrus-2D codes for estimating unsaturated soil hydraulic and solute transport parameters, in van Genuchten, M. Th., F. J. Leij, and L. Wu (eds.) Characterization and Measurement of the Hydraulic Properties of Unsaturated Porous Media, University of California, Riverside, CA, 1523-1536, 1999. *+
15. Šimůnek, J., and J. A. de Vos, Inverse optimization, calibration and validation of simulation models at the field scale, in J. Feyen and K. Wiyo (eds.) Modelling of Transport Process in Soils at Various Scales in Time and Space, Proc. of Intern. Workshop of EurAgEng's Field of Interest on Soil and Water, Leuven, Belgium, 24-26 November, 23-45, Wageningen Pers, Wageningen, The Netherlands, 1999. **+
16. Timbe, L., B. De Bievre, J. Feyen, and D. Jacques, Hydraulic characterization of hill slope soils, in J. Feyen and K. Wiyo (eds.) Modelling of Transport Process in Soils at Various Scales in Time and Space, Proc. of Intern. Workshop of EurAgEng's Field of Interest on Soil and Water, Leuven, Belgium, 24-26 November, 446-456, Wageningen Pers, Wageningen, The Netherlands, 1999.*

1998

1. Gribb, M. M., J. Šimůnek, and M. F. Leonard, Development of a cone penetrometer method to determine soil hydraulic properties, ASCE J. of Geotech. and Geoenviron. Eng., 124(9), 820-829, 1998. *+
2. Hokett, S. L., and D. R. French, Evaluation of recharge potential at crater U5a (Wishbone). DOE/NV/11508-02, Publ. No. 45160, Water Resources Center, Desert Research Institute, Las Vegas, NV, 1998. *2
3. Inoue, M., J. Šimůnek, J. W. Hopmans, and V. Clausnitzer, In-situ estimation of soil hydraulic functions using a multi-step soil water extraction technique, Water Resour. Rer., 34(5), 1035-1050, 1998. *+
4. Kodešová, R., M. M. Gribb, and J. Šimůnek, Estimating soil hydraulic properties from transient cone permeameter data, Soil Science, 163(6), 436-453, 1998. *+
5. Šimůnek, J., M. Th. van Genuchten, M. M. Gribb, and J. W. Hopmans, Parameter estimation of unsaturated soil hydraulic properties from transient flow processes, Soil & Tillage Research, 47/1-2, Special issue "State of the art in soil physics and in soil technology of antrophic soils", 27-36, 1998. *+
6. Šimůnek, J., R. Angulo-Jaramillo, M. Schaap, J.-P. Vandervaere, and M. Th. van Genuchten, Using an inverse method to estimate the hydraulic properties of crusted soils from tension disc infiltrometer data, Geoderma, 86(1-2), 61-81, 1998. *+
7. Šimůnek, J., D. Wang, P. J. Shouse, and M. Th. van Genuchten, Analysis of a field tension disc infiltrometer experiment by parameter estimation, Intern. Agrophysics, 12, 167-180, 1998. *+

1997

1. Ayars, J. E., M. E., Grismer, and. J. C. Guitjens, Water quality as design criterion in drainage water management system, J. Irrig. Drain. Eng., 123, 148–153, 1997.
2. Albright, W. H., Application of the Hydrus-2D Model to Landfill Cover Design in the State of Nevada. Water Resources Center, Desert Research Institute, Publication 41153, 1997.*
3. De Vos, J. A., Water flow and nutrient transport in a layered silt loam soil, PhD theses, Wageningen Agricultural University, Wageningen, The Netherlands, 1997. **
4. Šimůnek, J., and M. Th. van Genuchten, Estimating unsaturated soil hydraulic properties from multiple tension disc infiltrometer data, Soil Science, 162(6), 383-398, 1997. *+

1996

1. Šimůnek, J., and M. Th. van Genuchten, Estimating unsaturated soil hydraulic properties from tension disc infiltrometer data by numerical inversion, Water Resour. Res., 32(9), 2683-2696, 1996. *+
2. Albright, W. H., S. W. Tyler, and S. L. Hokett, Analysis of Shallow Soil Moisture Flux Adjacent to Area 5 RWMS, Water Resources Center, Desert Research Institute, Publication 45150, 1996.*

The CW2D module of HYDRUS:

1. Dittmer, U., D. Meyer, and G. Langergraber, Simulation of a subsurface vertical flow constructed wetland for CSO treatment, Water Sci. Technol., 51(9), 225-232, 2005.
2. Langergraber, G., The role of plant uptake on the removal of organic matter and nutrients in subsurface flow constructed wetlands – A simulation study, Water Sci. Technol., 51(9), 213-223, 2005.
3. Langergraber, G. and J. Šimůnek, Modeling variably-saturated water flow and multi-component reactive transport in constructed wetlands, Vadose Zone Journal, 4, 924-938, 2005.
4. Toscano, A., G. Langergraber, and G.L. Cirelli, Simulation of hydraulics and pollutant removal of a pilot-scale two-stage constructed wetlands functioning as secondary or tertiary treatment. In: Proceedings of the 10th IWA Specialized Group Conference on "Wetland Systems for Water Pollution Control" – Vol.2, 23-29 September 2006, Lisbon, Portugal, pp.1303-1311, 2006.
5. Henrichs, M., G. Langergraber, and M. Uhl, Modelling of organic matter degradation in constructed wetlands for treatment of combined sewer overflow, Sci. Total Environ., 380(1-3), 196-209, doi:10.1016/j.scitotenv.2006.11.044, 2007.
6. Langergraber, G., Simulation of the treatment performance of outdoor subsurface flow constructed wetlands in temperate climates, Sci. Total Environ., 380(1-3), 210-219, doi:10.1016/j.scitotenv.2006.10.030, 2007.
7. Langergraber, G., A. Tietz, and R. Haberl, Comparison of measured and simulated distribution of microbial biomass in subsurface vertical flow constructed wetlands, Water Sci. Technol., 56(3), 233-240, doi: 10.2166/wst.2007.496, 2008.
8. Langergraber, G., D. Giraldi, J. Mena, D. Meyer, M. Peña, A. Toscano, A. Brovelli, and E. Asuman Korkusuz, Recent developments in numerical modelling of subsurface flow constructed wetlands, Science of the Total Environment, 407(13), 3931-3943, 2009.
9. Leverenz, H. L., G. Tchobanoglous, and J. L. Darby, Clogging in intermittently dosed sand filters used for wastewater treatment, Water Research, 43(3), 695-705, 2009.
10. Toscano, A., G. Langergraber, S. Consoli, and G. L. Cirelli, Modelling pollutant removal in a pilot-scale two-stage subsurface flow constructed wetlands, Ecological Engineering, 35(2), 281-289, 2009.

SWMS-2D References (former version of HYDRUS 2D-Standard)

1. Petrie, C. L., Z. J. Kabala, A. E. Hall, and J. Šimůnek, Water transport in an unsaturated medium to roots with differing local geometries, Soil Sci. Soc. Am. J., 56, 1686-1694, 1992. *
2. Tseng, P.-H., and W. A. Jury, Simulation of field measurement of hydraulic conductivity in unsaturated heterogeneous soil, Water Resour. Res., 29(7), 2087-2099, 1993. *
3. Benjamin, J. G., H. R. Havis, L. R. Ahuja, and C. V. Alonso, Leaching and water flow patterns in every-furrow and alternate-furrow irrigation, Soil Sci. Soc. Am. J., 58, 1511-1517, 1994. *
4. Tseng, P.-H., and W. A. Jury, Comparison of transfer function and deterministic modeling of area-averaged solute transport in a heterogeneous field, Water Resour. Res., 30(7), 2051-2063, 1994. **
5. Roth, K., Steady state flow in an unsaturated, two-dimensional, macroscopically homogeneous, Miller-similar medium, Water Resour. Res., 31(9), 2127-2140, 1995. **
6. Wu, L, J. M. Baker, and R. R. Allmaras, Numerical and field evaluation of soil water sampled by suction lysimeters, J. Environ. Qual., 24(1), 147-152, 1995. *
7. Benjamin, J. G., L. R. Ahuja, and R. R. Allmaras, Modeling corn rooting patterns and their effects on water uptake and nitrate leaching, Plant and Soil, 179, 223-232, 1996. **
8. Gerke, H. H., and M. Th. van Genuchten, Macroscopic representation of structural geometry for simulating water and solute movement in dual-porosity media, Advances in Water Resour., 19(6), 343-357, 1996. *
9. Gribb, M. M., Parameter estimation for determining hydraulic properties of a fine sand from transient flow measurements, Water Resour. Res., 32(7), 1965-1974, 1996. *+
10. Pohll, G. M., J. J. Warwick, and S. W. Tyler, Coupled surface-subsurface hydrologic model of a nuclear subsidence crater at the Nevada test site, J. of Hydrology, 186, 43-62, 1996. *
11. Ritsema C. J., J. Stolte, K. Oostindie, E. VandenElsen, Measuring and modelling of soil water dynamics and runoff generation in an agricultural loessial hillslope, Hydrological Processes, 10(8), 1081-1089, 1996.
12. Roth, K., and K. Hammel, Transport of conservative chemical through an unsaturated two-dimensional Miller-similar medium with steady state flow, Water Resour. Res., 32(6), 1653-1663, 1996. **
13. Stolte J., C. J. Ritsema, G. J. Veerman, and W. Hamminga, Establishing temporally and spatially variable soil hydraulic data for use in a runoff simulation in a loess region of The Netherlands, Hydrological Processes, 10(8), 1027-1034, 1996.
14. Yang, J., R. Zang, J. Wu, and M. B. Allen, Stochastic analysis of adsorbing solute transport in two-dimensional unsaturated soils, Water Resour. Res., 32(9), 2747-2756, 1996. **
15. Abbaspour, K. C., M. Th. van Genuchten, R. Schulin, and E. Schläppi, A sequential uncertainty domain inverse procedure for estimating subsurface flow and transport parameters, Water Resour. Rer., 33(8), 1879-1892, 1997. **
16. Abriola, L. M., J. Lang, and K. Rathfelder, Michigan soil vapor extraction remediation (MISER) model: A computer program to model soil vapor extraction and bioventing of organic chemicals in unsaturated geological material, EPA/600/R-07/099, US EPA, Office of Research and Development, Washington DC, 1997. *
17. Braganm R. J., J. L. Starr, and T. B. Parkin, Acetylene transport in shallow groundwater for denitrification rate measurement, J. Environ. Qual., 26, 1524-1530, 1997.
18. Davis, A., S. Kamp, G. Fennemore, R. Schmidt, M. Keating, K. Hoenke, J. Wyatt, A risk-based approach to soil remediation modeling, Environ. Sci. & Technology, 31(11), 520A-525A, 1997. *
19. Guitjers, J. C., J. E. Ayars, M. E. Grismer, and L. S. Willardson, Drainage design for water quality management: Overview, J. Irr. Drain., 123(3), 148-153, 1997. -
20. Kampf, M., and H. Montenegro, On the performance of capillary barriers as landfill covers, Hydrology Earsh Syst. Sci., 1(4), 925-929, 1997.
21. Mallants, D., Toride, N., Tseng, P.-H., 1997. International Conference on Contaminated Sediments. Rotterdam, September 7-11, The Netherlands. Numerical simulation of chemical transport in a physically heterogeneous soil profile, 8 pp. - PDF Document (480 kB)
22. Morris, C. E., and J. C. Stormont, Capillary barriers and subtitle D covers: Estimating equivalency, J. Environ. Eng., 123(1), 3-10, 1997. -
23. Timlin, D. J., and Y. A. Pachepsky, A modular soil and root process simulator, Ecol. Model., 94(1):67-80, 1997.
24. Vanderborght, J., D. Jacques, D. Mallants, P.-H. Tseng, and J. Feyen, Comparison between field measurements and numerical simulations of steady-state solute transport in a heterogeneous soil profile, Hydrology and Earth System Sciences, 4, 853-871, 1997. **
25. Vanderborght, J., D. Jacques, D. Mallants, P.-H. Tseng, and J. Feyen, Analysis of solute redistribution in heterogeneous soil: II Numerical simulation of solute transport, in A. Soares et al. (eds.) geoENV I - Geostatistics for Environmental Applications, Kluwer Academic Publishers. The Netherlands. 283-295, 1997. **
26. Abbaspour, K. C., R. Schulin, M. Th. van Genuchten, and E. Schläppi, Procedures for uncertainty analyses applied to a landfill leachate plume, Ground Water, 36(6), 874-1883, 1997. **
27. Feyen, J., D. Jacques, A. Timmerman, and J. Vanderborght, Modelling water flow and solute transport in heterogeneous soil: A review of recent approaches, J. of Enggn. Res., 70, 231-256, 1998. **
28. Gerke, H. H., U. Buczko, and R. F. Hüttl, Beshschreibung von transport- und umwandlungsvorgüngen in der wasserungesüttigten zone heterogener braunkohletagebau-abraumkippender lausitz, Rekultivierung von Bergbaufolgelandschaften, eds. R. F. Hüttl, D. Klem, and E. Weber, Walter de Gruyter GmbH& Con KG, 169-183, 1999. **
29. Gerke, H. H., J. W. Molson, and E. O. Frind, Modelling the effects of chemical heterogeneity on acidification and solute leaching in overburden mine spoils, J. of Hydrology, 209, 166-185, 1998. *
30. Gribb, M. M., and G. Sewell, Solution of ground water flow problems with general purpose and special purpose computer codes, Ground Water, 36(2), 366-372, 1998. *
31. Hinz, C., Analysis of unsaturated/saturated water flow near a fluctuating water table, J. Contam. Hydrol., 33, 59-80, 1998. *
32. Vanderborght, J., D. Mallants, and J. Feyen, Solute transport in a heterogeneous soil for boundary and initial conditions: Evaluation of first-order approximation, Water Resour. Rer., 34(12), 3255-3270, 1998. **
33. Boateng, S., and J. D. Cawlfield, Two-dimensional sensitivity analysis of contaminant transport in the unsaturated zone, Ground Water, 37(2), 185-193, 1999. **
34. de Rooij, G. H., and P. de Vries, Efficient calculation of solute transport in heterogeneous soils exhibiting non-Richards-type unsaturated flow, J. Environ. Qual., 28, 493-497, 1999. **
35. Dou, C., W. Woldt, and I. Bogardi, Fuzzy rule-based approach to describe solute transport in the unsaturated zone, J. of Hydrology, 220(1-2), 74-85, 1999. **
36. El-Sadek, A., J. de Vos, J. Feyen, and S. Ducheyne, Analysis of the nitrate leaching to surface waters using a simplified and detailed model approach, in J. Feyen and K. Wiyo (eds.) Modelling of Transport Process in Soils at Various Scales in Time and Space, Proc. of Intern. Workshop of EurAgEng's Field of Interest on Soil and Water, Leuven, Belgium, 24-26 November, 77-87, Wageningen Pers, Wageningen, The Netherlands, 1999. **
37. Gabele, T., and R. Hoch, Soil-dependent flux boundary conditions for Wind's evaporation method, in van Genuchten, M. Th., F. J. Leij, and L. Wu (eds.) Characterization and Measurement of the Hydraulic Properties of Unsaturated Porous Media, University of California, Riverside, CA, 313-322, 1999. **
38. Hammmel, K., J. Gross, G. Wessolek, and K. Roth, Two-dimensional simulation of bromide transport in a heterogeneous field soil with transient unsaturated flow, European J. of Soil Sci., 50(4), 633-647, 1999. *
39. Jacques, D., J. Feyen, and D. Mallants, Determination of hydraulic properties using tension infiltrometer data and inverse optimization, in van Genuchten, M. Th., F. J. Leij, and L. Wu (eds.) Characterization and Measurement of the Hydraulic Properties of Unsaturated Porous Media, University of California, Riverside, CA, 749-760, 1999. *
40. Joris, I., and J. Feyen, Using SWMS_2D to simulate water flow in an alluvial plain, in J. Feyen and K. Wiyo (eds.) Modelling of Transport Process in Soils at Various Scales in Time and Space, Proc. of Intern. Workshop of EurAgEng's Field of Interest on Soil and Water, Leuven, Belgium, 24-26 November, 476, Wageningen Pers, Wageningen, The Netherlands,1999. *
41. Kasteel, R., I. Forrer, H. Flühler, and K. Roth, Solute transport estimated by field- and laboratory determined hydraulic parameter, in van Genuchten, M. Th., F. J. Leij, and L. Wu (eds.) Characterization and Measurement of the Hydraulic Properties of Unsaturated Porous Media, University of California, Riverside, CA, 1453-1458, 1999. **
42. Leij, F. J., J. Šimůnek, N. Toride, and T. Vogel, Mathematical solutions of the convection-dispersion equation, Chapter 10, In: Agricultural Drainage, Number 38 in the series Agronomy, Eds. J. van Schilfgaarde and W. Skaggs, 361-403, 1999. **
43. Meshkat M., R. C. Warner, and S. R. Workman, Modeling of evaporation reduction in drip irrigation system, Journal of Irrigation and Drainage Engineering-ASCE, 125(6), 315-323, 1999.
44. Parker D. B., D. E. Eisenhauer, D. D. Schulte, and D. L. Martin, Modeling seepage from an unlined beef cattle feedlot runoff storage pond, Transactions ASAE, 42(5), 1437-1445, 1999.
45. Zhang, Y, R. E. Smith, G. L. Butters, and G. E. Cardon, Analysis and testing of a concentric-disc tension infiltrometer, Soil Sci. Soc. Am. J., 63, 544-553, 1999. *
46. Abbaspour, K., V. Matta, P. Huggenberger, C. A. Johnson, A contaminated site investigation: comparison of information gained from geophysical measurements and hydrogeological modeling, J. of Contam. Hydrology, 40(4), 365-380, 2000.*
47. de Vos J. A., D. Hesterberg, P. A. C. Raats, Nitrate leaching in a tile-drained silt loam soil, Soil Sci. Soc. Am. J., 64(2), 517-527, 2000.
48. Minasny, B., and A. B. McBratney, Estimation of sorptivity from disc-permeameter measurements, Geoderma, 95, 305-324, 2000.*
49. Robinson, D. A., and S. P. Friedman, Parallel plates compared with conventional rods as TDR wavequides for sensing soil moisture, Subsurface Sensing Technologies and Applications, 1(4), 497-511, 2000.*
50. Abbaspour, K. C., A. Kohler, J. Šimůnek, M. Fritsch, and R. Schulin, Application of a two-dimensional model to simulate flow and transport in a macroporous agricultural field with tile drains, European J. of Soil Sci., 52(3), 433-447, 2001. *
51. Buczko U., H. H. Gerke, and R. F. Huttl, Spatial distributions of lignite mine spoil properties for simulating 2-D variably saturated flow and transport, Ecological Engineering, 17(2-3), 103-114, 2001.
52. Deurer, M., W. H. M. Duijnisveld, J. Böttcher, G. Klump, Heterogeneous solute flow in a sandy soil under a pine forest: evaluation of a modeling concept, J. of Plant Nutrition and Soil Sci., 164(6), 601-610, 2001.
53. El-Kadi, A. I. and J. D. Torikai, Identifying variably saturated water-flow patterns in a steep hillslope under intermittent heavy rainfall, Hydrogeology Journal, 9, 231–242, 2001.
54. Kohler, A., K. C. Abbaspour, M. Fritsch, and R. Schulin, Functional relationship to describe drains with entrance resistance, J. of Irrig. and Dran., 127(6), 355-362, 2001.
55. Kohler, A., K. C. Abbaspour, M. Fritsch, M. Th. van Genuchten, and R. Schulin, Simulating unsaturated flow and transport in a macroporous soil to tile drains subject to an entrance head: model development and preliminary evaluation, Journal of Hydrology, 254(1-4), 67-81, 2001.
56. Ruan, H., L. R. Ahuja, T. R. Green, and J. G. Benjamin, Residue cover and surface-seeling effects on infiltration: Numerical simulations for field applications, Soil Sci. Soc. Am. J., 65, 853-861, 2001. *
57. Osman Y. Z., and M. P. Bruen, Modelling stream-aquifer seepage in an alluvial aquifer: an improved loosing-stream package for MODFLOW, Journal of Hydrology, 264 (1-4), 69-86, 2002.
58. Tarboton, K. C., W. W. Wallender, and N. S. Raghuwanshi, 2–D saturated–unsaturated zone irrigation and drainage model: Part I. Theory, Trans. ASAE, 45(5), 1353–1363, 2002.
59. Tarboton, K. C., N. S. Raghuwanshi, and W. W. Wallender, 2–D saturated–unsaturated zone irrigation and drainage model: Part II. Sensitivity analysis, Trans. ASAE, 45(5), 1365–1373, 2002.
60. Mohrlok, U., Prediction of changes in groundwater dynamics caused by relocation of river embankments, Hydrology and Earth System Sciences, 7(1), 67–74, 2003.
61. Bruen M. P., and Y. Z. Osman, Sensitivity of stream-aquifer seepage to spatial variability of the saturated hydraulic conductivity of the aquifer, Journal of Hydrology, 293(1-4), 289-302, 2004.
62. Danchiv, A., L. Didita, and P. Ilie, Radionuclides transport at the site of a low and intermediate-level waste repository, Saligny, Romania, Hydrogeology Journal, 12, 688–697, 2004.
63. Schlather M., and B. Huwe, The use of the language interface of R: two examples for modelling water flux and solute transport, Computers & Geosciences, 30(2), 197-201, 2004.
64. Lewandowska J., A. Szymkiewicz, and J. L. Auriault, Upscaling of Richards' equation for soils containing highly conductive inclusions, Advances In Water Resources, 28(11), 1159-1170, 2005.
65. Watanabe, H. and K. Takagi, A simulation model for predicting pesticide concentrations in paddy water and surface soil. I. Model development, Environ. Technol., 21, 1379-1391 2000.
66. Tournebize, J., H. Watanabe, K. Takagi, and T. Nishimura, The development of a coupled model (PCPF-SWMS) to simulate water flow and pollutant transport in Japanese paddy fields, Paddy Water Environ., 4, 39-51, 2006.
67. Deurer, M. and J. Bachmann, Modeling Water Movement in Heterogeneous Water-Repellent Soil: 2. A Conceptual Numerical Simulation, Vadose Zone J., 6, doi:10.2136/vzj2006.0061, 446–457, 2007.
68. Kasteel, R., T. Putz, and H. Vereecken, An experimental and numerical study on flow and transport in a field soil using zero-tension lysimeters and suction plates, Europ. J. of Soil Sci., 58(3), 632–645, 2007.
69. Palla, A., I. Gnecco, and L.G. Lanza, Unsaturated 2D modelling of subsurface water flow in the coarse-grained porous matrix of a green roof, Journal of Hydrology, 379(1-2), 193-204, 2009.
70. Shi, L., J. Yang, D. Zhang, and H. Li, Probabilistic collocation method for unconfined flow in heterogeneous media, Journal of Hydrology, 365(1-2), 4-10, 2009.
71. Yang, D., T. Zhang, K. Zhang, D. J. Greenwood, J. P. Hammond, and P. J. White, An easily implemented agro-hydrological procedure with dynamic root simulation for water transfer in the crop–soil system: Validation and application, Journal of Hydrology, 370(1-4), 177-190, 2009.

SWMS-3D References (former version of HYDRUS 3D-Standard)

1. Roth K., H.-J. Vogel, and R. Kasteel, The scaleway: a conceptual framework for upscaling soil properties, in J. Feyen and K. Wiyo (eds.) Modelling of Transport Process in Soils at Various Scales in Time and Space, Proc. of Intern. Workshop of EurAgEng's Field of Interest on Soil and Water, Leuven, Belgium, 24-26 November, 477-490, Wageningen Pers, Wageningen, The Netherlands, 1999. *
2. Kasteel, R., H.-J. Vogel, and K. Roth, From local hydraulic properties to effective transport in soil, European J. of Soil Sci., 51, 81-91, 2000. **
3. Vrugt, J.A., M. T. van Wijk, J. W. Hopmans, and J. Šimůnek, One-, two-, and three-dimensional root water uptake functions for transient modeling, Water Resour. Res., 37(10), 2457-2470, 2001. *
4. Buyuktas D, Wallender WW , Enhanced subsurface irrigation hydrology model, Journal Of Irrigation And Drainage Engineering, ASCE, 128(3), 168-174, 2002.
5. Herbst, M., and B. Diekkrüger, The influence of the spatial structure of soil properties on water balance modeling in a micro-scale catchment, Physics and Chemistry of the Earth, 27, 701-710, 2002.
6. Herbst, M., and B. Diekkrüger, Modelling the spatial variability of soil moisture in a micro-scale catchment and comparison with field data using geostatistics, Physics and Chemistry of the Earth, 28, 239-245, 2003.
7. Lewandowska, J., A. Szymkiewicz, K. Burzynski, and M. Vauclin, Modeling of unsaturated water flow in double-porosity soils by the homogenization approach, Adv. Water Resour., 27, 283-296, 2004.
8. Vogel, H.-J., I. Cousin, O. Ippish, and P. Bastian, The dominant role of structure for solute transport in soil: experimental evidence and modeling of structure and transport in a field experiment, Hydrology and Earth System Sciences, 10, 495-506, 2006.
9. Javaux, M., J. Vanderborght, R. Kasteel and M. Vanclooster, Three-dimensional modeling of the scale- and flow rate-dependency of dispersion in a heterogeneous unsaturated sandy monolith, Vadose Zone J., 5, 515-528, 2006.
10. Javaux, M., and M. Vanclooster, Three-dimensional structure characterization and modelling of transient flow in an undisturbed variably saturated heterogeneous monolish, J. Hydrol. (Amst.), 327, 516-524, 2006.
11. Hardelauf, H., M. Javaux, M. Herbst, S. Gottschalk, R. Kasteel, J. Vanderborght, and H. Vereecken, PARSWMS: A parallelized model for simulating three-dimensional water flow and solute transport in variably saturated soils, Vadose Zone J., 6(2), 255-259, 2007.
12. Herbst, M., S. Gottschalk, M. Reissel, H. Hardelauf, R. Kasteel, M. Javaux, J. Vanderborght, and H. Vereecken, On preconditioning for a parallel solution of the Richards equation, Computer & Geosciences, 34, 1958-1963, 2008.
13. Javaux, M., T. Schröder, J. Vanderborght, and H. Vereecken, Use of a Three-Dimensional Detailed Modeling Approach for Predicting Root Water Uptake, Vadose Zone J., 7, 1079–1088, doi:10.2136/vzj2007.0115, 2008.

CHAIN-2D References (former version of HYDRUS 2D-Standard)

1. Mohanty, B. P., R. S. Bowman, J. M. H. Hendrickx, and M. Th. van Genuchten, New piecewise-continuous hydraulic functions for modeling preferential flow in an intermittent-flood-irrigated field, Water Resour. Rer., 33(6), 2049-2063, 1997. *
2. Wang, D., S. R. Yates, J. Šimůnek, and M. Th. van Genuchten, Solute transport in simulated conductivity fields under different irrigations, J. Irrig. and Drain., 123(5), 336-343, 1997. **
3. Wang, D., S. R. Yates, and J. Gan, Temperature effect on methyl bromide volatilization in soil fumigation, Journal of Environmental Quality, 26(4), 1072-1079, 1997. **
4. Mohanty, B. P., T. H. Skaggs, and M. Th. van Genuchten, Impact of saturated hydraulic conductivity on the prediction of tile flow, Soil Sci. Soc. Am. J., 62, 1522-1529, 1998. *
5. Mohanty, B. P., R. S. Bowman, J. M. H. Hendrickx, J. Šimůnek, and M. Th. van Genuchten, Preferential transport of nitrate to a tile drain in an intermittent-flood-irrigated field: Model development and experimental evaluation, Water Resour. Rer., 34(5), 1061-1076, 1998. **
6. Wang, D., S. R. Yates, and J. Gan, W. A. Jury, Temperature effect on methyl bromide volatilization: Permeability of plastic cover films, Journal of Environmental Quality, 28(4), 821-827, 1998.**
7. Flury, M., M. V. Yates, and W. A. Jury, Numerical analysis of the effect of the lower boundary condition on solute transport in lysimeters, Soil Sci. Soc. Am. J., 63, 1493-1499, 1999. **
8. Forrer, I., R. Kasteel, M. Flury, and H. Fluhler, Longitudinal and lateral dispersion in an unsaturated field soils, Water Resour. Rer., 35(10), 3049-3060, 1999. **
9. Scharlaekens, J., D. Mallants, J. Šimůnek, M. Th. van Genuchten, and J. Feyen, Numerical simulation of transport and sequential biodegradation of chlorinated aliphatic hydrocarbons using CHAIN_2D, J. of Hydrological Processes, 13, 2847-2859, 1999. **
10. Wang, D., J. A. Knuteson, S. R. Yates, Two-dimensional model simulation of 1,3-dichloropropene volatilization and transport in a field soil, Journal of Environmental Quality, 29(2), 639-644, 2000. **
11. Butters, G. L., J. G. Benjamin, L. R. Ahuja, and H. Ruan, Bromide and atrazine leaching in furrow- and sprinkler-irrigated corn, Soil Sci. Soc. Am. J., 64(5), 1723-1732, 2000. **
12. Abdou H. M., and M. Flury, Simulation of water flow and solute transport in free-drainage lysimeters and field soils with heterogeneous structures, European Journal Of Soil Science, 55(2), 229-241, 2004.
13. Wang, D., J. M. He, and J. A. Knuteson, Concentration–Time Exposure Index for Modeling Soil Fumigation under Various Management Scenarios, J. Environ. Qual., 33, 685-694, 2004.
14. Cryer, S. A., and I. J. van Wesenbeeck, Estimating field volatility of soil fumigants using CHAIN_2D: Mitigation methods and comparison against chloropicrin and 1,3-dichloropropene field observations, Environ. Model Assess., DOI 10.1007/s10666-009-9208-4, published online October 2009.