References

Hydrus-1D References

See also HYDRUS (2D/3D) selected references

Hydrus-1D Selected References

... * Water Flow ...
... ** Solute Transport ...
... + Inverse Problem ...

2010

1. Brueck, H., K. Erdle, Y. Gao, M. Giese, Y. Zhao, S. Peth, and S. Lin, Effects of N and water supply on water use-efficiency of a semiarid grassland in Inner Mongolia, Plant Soil, 328, 495–505, 2010.
2. Cheyns, K., J. Mertens, J. Diels, E. Smolders, and D. Springael, Monod kinetics rather than a first-order degradation model explains atrazine fate in soil mini-columns: Implications for pesticide fate modeling, Environmental Pollution, 158(5), 1405-1411, 2010.
3. De Wilde, T., P. Spanoghe, K. Sniegowksi, J. Ryckeboer, P. Jaeken, and D. Springael, Transport and degradation of metalaxyl and isoproturon in biopurification columns inoculated with pesticide-primed material, Chemosphere, 78(1), 56-60, 2010.
4. Ficklin, D. L., E. Luedeling, and M. Zhang, Sensitivity of groundwater recharge under irrigated agriculture to changes in climate, CO2 concentrations and canopy structure, Agricultural Water Management, 97(7), 1039-1050, 2010.
5. Hanna, K., B. Rusch, L. Lassabatere, A. Hofmann, and B. Humbert, Title: Reactive transport of gentisic acid in a hematite-coated sand column: Experimental study and modeling, Geochimica et Cosmochimica Acta, 74(12), 3351-3366, 2010.
6. Huisman, J. A., J. Rings, J. A. Vrugt, J. Sorg, and H. Vereecken, Hydraulic properties of a model dike from coupled Bayesian and multi-criteria hydrogeophysical inversion, Journal of Hydrology, 380(1-2), 62-73, 2010.
7. Jellali, S., E. Diamantopoulos, H. Kallali, S. Bennaceur, M. Anane, and N. Jedidi, Dynamic sorption of ammonium by sandy soil in fixed bed columns: Evaluation of equilibrium and non-equilibrium transport processes, J. Environ. Management, 91(4), 897-905, 2010.
8. Jiang, S., L. Pang, G. D. Buchan, J. Šimůnek, M. J. Noonan, and M. E. Close, Modeling water flow and bacterial transport in undisturbed lysimeters under irrigations of dairy shed effluent and water using HYDRUS-1D, Water Research, special issue, doi:10.1016/j.watres.2009.08.039, 44, 1050-1061, 2010.
9. Köhler, M., L. Schwendenmann, and D. Hölscher, Throughfall reduction in a cacao agroforest: tree water use and soil water budgeting, Agricultural and Forest Meteorology, 150( 7-8), 1079-1089, 2010.
10. Laclau, J.-P., J. Ranger, J. L. de Moraes Gonçalves, V. Maquère, A. V. Krusche, A. Thongo M’Bou, Y. Nouvellon, L. Saint-André, J.-P. Bouillet, M. de Cassia Piccolo, and P. Deleporte, Biogeochemical cycles of nutrients in tropical Eucalyptus plantations: Main features shown by intensive monitoring in Congo and Brazil, Forest Ecology and Management, 259(9), 1771-1785, 2010.
11. Lassabatere, L, R. Angulo-Jaramillo, D. Goutaland, L. Letellier, J.P. Gaudet, T. Winiarski, and C. Delolme, Effect of the settlement of sediments on water infiltration in two urban infiltration basins, Geoderma, 156(Issues 3-4), 316-325, 2010.
12. Lazaridis, N. K., and H. Keenan, Chitosan beads as barriers to the transport of azo dye in soil column, J. Hazardous Materials, 173(1-3), 144-150, 2010.
13. Li LiAng, Shi HaiBin, Jia JinFeng, et al., Simulation of water and salt transport of uncultivated land in Hetao Irrigation District in Inner Mongolia, Transactions of the Chinese Society of Agricultural Engineering, 26(1), 31-35, 2010.
14. Luo, Y. and M. Sophocleous, Seasonal groundwater contribution to crop-water use assessed with lysimeter observations and model simulations, Journal of Hydrology, In Press, Corrected Proof, Available online 10 June 2010.
15. Ma, Y., Shaoyuan Feng, Dongyuan Su, Guangyao Gao, Zailin Huo, Modeling water infiltration in a large layered soil column with a modified Green–Ampt model and HYDRUS-1D, Computers and Electronics in Agriculture, 71(1), S40-S47, 2010.
16. Mastrocicco, M., N. Colombani, E. Salemi, and G. Castaldelli, Numerical assessment of effective evapotranspiration from maize plots to estimate groundwater recharge in lowlands, Agricultural Water Management, 97(9), 1389-1398, 2010.
17. Mattern, S., and M. Vanclooster, Estimating travel time of recharge water through a deep vadose zone using a transfer function model, Environ Fluid Mech., 10, 121–135, 2010.
18. Nikodem, A., R. Kodešová, O. Drábek, L. Bubeníčková, L. Borůvka, L. Pavlů, and V. Tejnecký, A Numerical Study of the Impact of Precipitation Redistribution in a Beech Forest Canopy on Water and Aluminum Transport in a Podzol, Vadose Zone J., 9 (2), 238–251, doi:10.2136/vzj2009.0083, 2010.
19. Price, J. S., and P. N. Whittington, Water Flow in Sphagnum Hummocks: Mesocosm Measurements and Modelling, Journal of Hydrology, In Press, Accepted Manuscript, 381( 3-4), 333-340, 2010.
20. Schindler, J., W. Durner, G. von Unold, and L. Müller, Evaporation Method for Measuring Unsaturated Hydraulic Properties of Soils: Extending the Measurement Range, Soil Sci. Soc. Am. J., 74(4), 1071–1083, 2010.
21. Valiantzas, J. D., New linearized two-parameter infiltration equation for direct determination of conductivity and sorptivity, Journal of Hydrology, 384( 1-2), 1-13, 2010.
22. Wang, H., Xiaotang Ju, Yongping Wei, Baoguo Li, Lulu Zhao, Kelin Hu, Simulation of bromide and nitrate leaching under heavy rainfall and high-intensity irrigation rates in North China Plain, Agricultural Water Management, In Press, Corrected Proof, Available online 29 June, 2010.
23. Wissmeier, L., and D. A. Barry, Implementation of variably saturated flow into PHREEQC for the simulation of biogeochemical reactions in the vadose zone, Environmental Modelling & Software, 25(4), 526-538, 2010.
24. Xie, T., X. Liu, and T. Sun, The effects of groundwater table and flood irrigation strategies on soil water and salt dynamics and reed water use in the Yellow River Delta, China, Ecological Modelling, In Press, Corrected Proof, Available online 16 March 2010.
25. Zhang, K., I. G. Burns, D. J. Greenwood, J. P. Hammond, and P. J. White Developing a reliable strategy to infer the effective soil hydraulic properties from field evaporation experiments for agro-hydrological models, Agricultural Water Management, 97(3), 399-409, 2010.

2009

1. Bah A. R., O. Kravchuk, and G. Kirchhof, Sensitivity of drainage to rainfall, vegetation and soil characteristics, Computers And Electronics In Agriculture, 68(1), 1-8, 2009.
2. Boudreau, J., J. Caron, and D. Elrick, J. Fortin, and J. Gallichand, Solute transport in sub-irrigated peat-based growing media, Canadian Journal Of Soil Science, 89(3), 301-313, 2009.
3. Bradford, S. A., S. Torkzaban, F. J. Leij, J. Šimůnek, and M. Th. van Genuchten, Modeling the coupled effects of pore space geometry and velocity on colloid transport and retention, Wat. Resour. Res., 45, W02414, doi:10.1029/2008WR007096, 15 pp., 2009.
4. Chen, W., L. Wu, A. C. Chang, and Z. Hou, Assessing the effect of long-term crop cultivation on distribution of Cd in the root zone, Ecological Modelling, 220(15), 1836-1843, 2009.
5. Cheviron, B., and Y. Coquet. Sensitivity Analysis of Transient-MIM HYDRUS-1D: Case Study Related to Pesticide Fate in Soils, Vadose Zone J., 8, 1064–1079, doi:10.2136/vzj2009.0023, 2009.
6. Crevoisier, D., A. Chanzy, and M. Voltz, Evaluation of the Ross fast solution of Richards' equation in unfavourable conditions for standard finite element methods, Advances In Water Resources, 32(6), 936-947, 2009.
7. de Jong van Lier, Q., J. C. van Dam, and K. Metselaar, Root Water Extraction under Combined Water and Osmotic Stress, Soil Sci. Soc. Am. J.. 73(3), 862-875, 2009.
8. De Wilde, T., J. Mertens, J. Šimůnek, K. Sniegowksi, J. Ryckeboer, P. Jaeken, D. Springael, and P. Spanoghe, Characterizing pesticide sorption and degradation in micro scale biopurification systems using column displacement experiments, Environmental Pollution, 157, 463-473, 2009.
9. Dong, H. M., Q. J. Wang, and M. A. Sbal, Analytical method for estimating soil hydraulic parameters from horizontal absorption, Soil Sci. Soc. Am. J., 73(3), 727-736, 2009.
10. Dontsova, K. M., J. C. Pennington, C. Hayes, J. Šimůnek, and C. W. Williford, Dissolution and transport of 2,4-DNT and 2,6-DNT from M1 propellant, Chemosphere, 77 (4), 597-603, 2009.
11. Endo A, S. Mishima, and K. Kohyama, Modeling nitrate leaching on a cropped Andosol, Nutrient Cycling In Agroecosystems, 85(1), 41-61, 2009.
12. Fishkis, O., J. Ingwersen, and T. Streck, Phytolith transport in sandy sediment: Experiments and modeling, Geoderma, 151(3-4), 168-178, 2009.
13. Forkutsa, I., R. Sommer, Y. I. Shirokova, J. P. A. Lamers, K. Kienzler, B. Tischbein, C. Martius, P. L. G. Vlek, Modeling irrigated cotton with shallow groundwater in the Aral Sea Basin of Uzbekistan: I. Water dynamics, Irrig. Sci., DOI 10.1007/s00271-009-0148-1, 2009.
14. Forkutsa, I., R. Sommer, Y. I. Shirokova, J. P. A. Lamers, K. Kienzler, B. Tischbein, C. Martius, P. L. G. Vlek, Modeling irrigated cotton with shallow groundwater in the Aral Sea Basin of Uzbekistan: II. Soil salinity dynamics, Irrig. Sci., DOI 10.1007/s00271-009-0149-0, 2009.
15. Garg, K. K., B. S. Das, M. Safeeq, and P. B.S. Bhadoria, Measurement and modeling of soil water regime in a lowland paddy field showing preferential transport, Agricultural Water Management, (in press), 2009.
16. George, L. A., M. M. Dewoolkar, and D. Znidarcic, Simultaneous Laboratory Measurement of Acoustic and Hydraulic Properties of Unsaturated Soils, Vadose Zone J. 8(3), 633-642, 2009.
17. Gribb, M. M., I. Forkutsa, A. Hansen, D. G. Chandler, and J. P. McNamara, The Eff ect of Various Soil Hydraulic Property Estimates on Soil Moisture Simulations, Vadose Zone J., 8(2), 321-331, 2009.
18. Guan, H. and. J. L. Wilson, A hybrid dual-source model for potential evaporation and transpiration partitioning, Journal of Hydrology, 377(3-4), 405-416, 2009.
19. Guber, A. K., Y. A. Pachepsky, M. Th. van Genuchten, J. Šimůnek, D. Jacques, A. Nemes, T. J. Nicholson, and R. E. Cady, Multimodel simulation of water flow in a field soil using pedotransfer functions, Vadose Zone Journal, 8, 1-10, 2009.
20. Hinnell, A. C., N. Lazarovitch, and A. W. Warrick, Explicit infiltration function for boreholes under constant head conditions, Water Resour. Res., 45, W10429, doi:10.1029/2008WR007685, 2009.
21. Janssen, M. and B. Lennartz, Water losses through paddy bunds: Methods, experimental data, and simulation studies, Journal of Hydrology, 369(1-2), 142-153, 2009.
22. Jellali, S., T. Sediri, H. Kallali, M. Anane, and N. Jedidi, Analysis of hydraulic conditions and HRT on the basis of experiments and simulations on soil column, Desalination, 246( 1-3), 435-443, 2009.
23. Jimenez-Martinez, J. T. H. Skaggs, M. Th. van Genuchten, and L. Candela, A root zone modelling approach to estimating groundwater recharge from irrigated areas, J. Hydrol., 367(1-2), 138-149, 2009.
24. Karpf, C., J. Traenckner, and P. Krebs, Hydraulic modelling of sewage exfiltration, Water Science And Technology, 59(8), 1559-1565, 2009.
25. Kodešová,R., N. Vignozzi, M. Rohošková, T. Hájková, M. Kočárek, M. Pagliai, J. Kozák, and J. Šimůnek, Impact of varying soil structure on transport processes in soils, J. Contam. Hydrology, Special Issue “Flow Domains”, doi:10.1016/j.jconhyd.2008.10.008, 104(1-4), 107-125, 2009.
26. Kuntz, D., and P. Grathwohl Comparison of steady-state and transient flow conditions on reactive transport of contaminants in the vadose soil zone, Journal of Hydrology, 369(3-4), 225-233, 2009.
27. Lambot, S., E. Slob, J. Rhebergen, O. Lopera, K. Zaib Jadoon, and H. Vereecken, Remote Estimation of the Hydraulic Properties of a Sand Using Full-Waveform Integrated Hydrogeophysical Inversion of Time-Lapse, Off-Ground GPR Data, Vadose Zone J. 8(3), 743-754, 2009.
28. Legout, C., J. Molenat, and Y. Hamon, Experimental and Modeling Investigation of Unsaturated Solute Transport with Water-Table Fluctuation, Vadose Zone J.. 8, 21-31, 2009.
29. Li, Z. and H. Hong, Retardation of chromate through packed columns of surfactant-modified zeolite, Journal of Hazardous Materials, 162(2-3), 1487-1493, 2009.
30. Li, N., and L. Ren, Application of continuous time random walk theory to nonequilibrium transport in soil, J. Contam. Hydrol., 108, 134–151, 2009.
31. Ma DongHao, QuanJiu Wang, and MingAn Shao, Analytical Method for Estimating Soil Hydraulic Parameters from Horizontal Absorption, Soil Sci. Soc. Am. J., 73(3), 727-736, 2009.
32. Mao, M. and L. Ren, An upscaling approach to simulate unsaturated flow in horizontally heterogeneous soils at field scale under flood irrigation, Agricultural Water Management, In Press, Corrected Proof, Available online 21 April 2009.
33. Monteiro, A. L. N., A. D. D. Montenegro, S. M. G. Montenegro, et al., Partial salt leaching evaluation in an irrigated fluvissol through computational modeling, Engenharia Agricola, 29(2), 207-220, 2009.
34. Neukum, C., and R. Azzam, Quantitative assessment of intrinsic groundwater vulnerability to contamination using numerical simulations, Science of The Total Environment, 408(2), 245-254, 2009.
35. Ngoc, M. N., S. Dultz, and J. Kasbohm, Simulation of retention and transport of copper, lead and zinc in a paddy soil of the Red River Delta, Vietnam, Agriculture Ecosystems & Environment, 129(1-3), 8-16, 2009.
36. Phogat, V., R. S. Malik, and S. Kumar, Modelling the effect of canal bed elevation on seepage and water table rise in a sand box filled with loamy soil, Irrig. Sci., 27, 191–200, DOI 10.1007/s00271-008-0132-1, 2009.
37. Rozemeijer, J.C., H.P. Broers, F.C. van Geer, and M.F.P. Bierkens, Weather-induced temporal variations in nitrate concentrations in shallow groundwater, Journal of Hydrology, 378, 119–127, 2009.
38. Rudiš, M., P. Valenta, J. Valentová, and O. Nol, Assessment of the deposition of polluted sediments transferred by a catastrophic flood and related changes in groundwater quality, Journal of Hydrology, 369(3-4), 326-335, 2009.
39. Sander, T., and H. H. Gerke, Modelling field-data of preferential flow in paddy soil induced by earthworm burrows, J. Contam. Hydrol., doi:10.1016/j.jconhyd.2008.11.003, 104(1-4), 129-136, 2009.
40. Saito, H., and J. Šimůnek, Effects of meteorological models on the solution of the surface energy balance and soil temperature variations in bare soils, J. Hydrology, doi:10.1016/j.jhydrol.2009.05.019, 373(3-4), 545-561, 2009.
41. Sakai, M., N. Toride, and J. Šimůnek, Water and vapor movement with condensation and evaporation in a sandy column subject to temperature gradient, Soil Sci. Soc. Am. J., 73(3), 707-717, 2009.
42. Šimůnek, J. and J. W. Hopmans, Modeling compensated root water and nutrient uptake, Ecological Modeling, doi:10.1016/j.ecolmodel.2008.11.004, 220(4), 505-521, 2009.
43. Šimůnek, J., D. Jacques, N. K. C. Twarakavi, and M. Th. van Genuchten, Selected HYDRUS modules for modeling subsurface flow and contaminant transport as influenced by biological processes at various scales, Biologia, 64(3), 465-469, DOI: 10.2478/s11756-009-0106-7, 2009.
44. Soulis, K. X., J. D. Valiantzas, N. Dercas, and P. A. Londra, Investigation of the direct runoff generation mechanism for the analysis of the SCS-CN method applicability to a partial area experimental watershed, Hydrol. Earth Syst. Sci., 13, 605–615, 2009.
45. Stumpp, C., G. Nützmann, S. Maciejewski, and P. Maloszewski, A comparative modeling study of a dual tracer experiment in a large lysimeter under atmospheric conditions, J. Hydrol., 375, 566–577, 2009.
46. Stumpp, C., P. Maloszewski, W. Stichler, and J. Fank, Environmental isotope (δ18O) and hydrological data to assess water flow in unsaturated soils planted with different crops: Case study lysimeter station “Wagna” (Austria), Journal of Hydrology, 369(1-2), 198-208, 2009.
47. Stumpp, C., W. Stichler, P. Maloszewski, Application of the environmental isotope δ18O to study water flow in unsaturated soils planted with different crops: Case study of a weighable lysimeter from the research field in Neuherberg, Germany, Journal of Hydrology, 368(1-4), 68-78, 2009.
48. Twarakavi, N. K. C., J. Šimůnek, and M. Schaap, Support vector machine based pedotransfer functions for estimation of soil hydraulic parameters, Soil Sci. Soc. Am. J., 73(5), 1443-1452, 2009.
49. Twarakavi, N. K. C, M. Sakai, and J. Šimůnek, An objective analysis of the dynamic nature of field capacity, Water Resour. Res., 45, W10410, doi:10.1029/2009WR007944, pp. 9, 2009.
50. Unold, M., R. Kasteel, J. Groeneweg, and H. Vereecken, Transport and transformation of sulfadiazine in soil columns packed with a silty loam and a loamy sand, J. Contam. Hydrology, 103(1-2), 38–47, 2009.
51. van den Berg, E. H., E. Perfect, C. Tu, P. S. K. Knappett, T. P. Leao, and R. W. Donat, Unsaturated Hydraulic Conductivity Measurements with Centrifuges: A Review, Vadose Zone J. 8(3), 531-547, 2009.
52. Venkatraman, K., and N. Ashwath, Phytocapping: Importance of Tree Selection and Soil Thickness, Water Air Soil Pollut: Focus, 9, 421–430, 2009.
53. Violette, S., G. Boulicot, and S. M. Gorelick, Tsunami-induced groundwater salinization in southeastern India, Comptes Rendus Geosciences, 341(4), 339-346, 2009.
54. Wang, T., V. A. Zlotnik, J. Šimůnek, and M. G. Schaap, Using pedotransfer functions in vadose zone models for estimating groundwater recharge in semiarid regions, Water Resour. Res., 45, W04412, doi:10.1029/2008WR006903, 12 pp., 2009.
55. Weihermüller, L., J. A. Huisman, A. Graf, M. Herbst, and J.-M. Sequaris, Multistep Outflow Experiments to Determine Soil Physical and Carbon Dioxide Production Parameters, Vadose Zone J. 8(3), 772-782, 2009.
56. Wissmeier, L., and D. A. Barry, Effect of mineral reactions on the hydraulic properties of unsaturated soils: Model development and application, Adv. Water Resour., in review, 2008.
57. Young, M. H., T. G. Caldwell, D. G. Meadows, and L. F. Fenstermaker, Variability of soil physical and hydraulic properties at the Mojave Global Change Facility, Nevada: Implications for water budget and evapotranspiration, J. Arid Environ., 73(8), 733-744, 2009.
58. Zhang, Q., A. D. Werner, R. F. Aviyanto, and J. L. Hutson, Influence of soil moisture hysteresis on the functioning of capillary barriers, Hydrological Processes, 23(9), 1369-1375, 2009.
59. Zeng, Y., Z. Su, L.Wan, Z. Yang, T. Zhang, H. Tian, X. Shi, X. Wang, and W. Cao, Diurnal pattern of the drying front in desert and its application for determining the effective infiltration, Hydrol. Earth Syst. Sci., 13, 703–714, 2009.
60. Zeng, Y., L. Wan, Z. Su, H. Saito, K. Huang, and X. Wang, Diurnal soil water dynamics in the shallow vadose zone (field site of China University of Geosciences, China), Environmental Geology, 58(1), 11-23, 2009.
61. Zhu, J. and D. Sun, Effective Soil Hydraulic Parameters for Transient Flows in Heterogeneous Soils, Vadose Zone J., 8(2), 301-309, 2009.
62. Zhu, Y. H. , L. L. Ren, T. H. Skaggs, et al., Simulation of Populus euphratica root uptake of groundwater in an arid woodland of the Ejina Basin, China, Hydrological Processes, 23(17), 2460-2469, 2009.

2008

1. Arnon Shai, Ofer Dahan, Sara Elhanany, Keren Cohen, Irena Pankratov, Amit Gross, Zeev Ronen, Shahar Baram and Laurence S. Shore, Transport of Testosterone and Estrogen from Dairy-Farm Waste Lagoons to Groundwater, Environ. Sci. Technol., 42 (15), 5521–5526, 2008.
2. Bethune, M. G., B. Selle, and Q. Wang, Understanding and Predicting Deep Percolation under Surface Irrigation, Water Resour. Res., 44, W12430, doi:10.1029/2007WR006380, 2008.
3. Charles, K. J., F. C. Souter, D. L. Baker, C. M. Davies, J. F. Schijven, D. J. Roser, D. A. Deere, P. K. Priscott, and N. J. Ashbolt, Fate and transport of viruses during sewage treatment in a mound system, Water Research, 42(12), 3047-3056, 2008.
4. Choy, C. C., M. Wazne, and X. Meng, Application of an empirical transport model to simulate retention of nanocrystalline titanium dioxide in sand columns, Chemosphere, 71(9), 1794-1801, 2008.
5. de Wilde, T., J. Mertens, P. Spanoghe, J. Ryckeboer, P. Jaeken, and D. Springael, Sorption kinetics and its effects on retention and leaching. Chemosphere, 72(3), 509-516, 2008.
6. Durner, W., U. Jansen, And S. C. Iden, Effective hydraulic properties of layered soils at the lysimeter scale determined by inverse modeling, Europ. J. Soil Sci., 59(1), 114–124, 2008.
7. Fujimaki, H., Y. Ando, Y. Cui, and Mitsuhiro Inoue, Parameter Estimation of a Root Water Uptake Model under Salinity Stress, doi:10.2136/vzj2007.0025, Vadose Zone J., 7, 31–38, 2008.
8. Gargiulo, G., S. A. Bradford, J. Šimůnek, P. Ustohal, H. Vereecken, and E. Klumpp, Bacteria transport and deposition under unsaturated conditions: the role of bacteria surface hydrophobicity, Vadose Zone Journal, 7(2), doi:10.2136/vzj2007.0068, 406-419, 2008.
9. Gerke, H. H. and A. Badorreck, Single- and dual-porosity modeling of flow in reclaimed mine soil cores with embedded lignitic fragments, J. Contam. Hydrol., (in press), 2008.
10. Grünberger, O., P. Macaigne, J.-L. Michelot, C. Hartmann and S. Sukchan, Salt crust development in paddy fields owing to soil evaporation and drainage: Contribution of chloride and deuterium profile analysis, J. Hydrology, 348(1-2), 110-123, 2008.
11. Gusev, E. M., V. Shtekauerova, K. Steglova, Yu. Maierchak, A. G. Kocharyan, and K. E. Nikitskaya, Determination of Soil Hydrophysical Characteristics in the Ivankovo Reservoir Watershed, Water Resources, 35(3), 330–338, © Pleiades Publishing, Ltd., 2008.
12. Hao, F.-H., Y.-W. Ou, Y. Yue, Zh.-F. Yang, and P. Li, Analysis of water cycle characteristics and soil water movement in the agricultural irrigation area in Inner Mongolia, Acta Scientiae Circunstantiae, 28(5), 825-831, 2008.
13. Hao, F.-H., W. Sun, A.-Y. Zeng, P. Li, J.-X. Zhang, and Y. Yue, Simulation of N transfer under different irrigation and fertilization scenarios in the Hetao irrigation area using HYDRUS-1D model, Acta Scientiae Circunstantiae, 28(5), 853-858, 2008.
14. Haruta, S., W. Chen, J. Gan, J. Šimůnek, A. C. Chang, and L. Wu, Leaching risk of N-nitrosodimethylamine (NDMA) in soil receiving reclaimed wastewater, Highlighted article in Ecotoxicology and Environmental Safety, 69, 374–380, 2008.
15. Hilten, R. N., T. M. Lawrence, and E. W. Tollner, Modeling stormwater runoff from green roofs with Hydrus-1D, Journal of Hydrology, 358(3), 288-293, 2008.
16. Hu, K. L., B. G. Li, D. Chen, R. E. White, and Y. Zhang, Simulation of nitrate leaching under irrigated maize on sandy soil in desert oasis in Inner Mongolia, China, Agricultural Water Management, 2008 (submitted).
17. Jandl, R., F. Herman, S. Smidt, K. Butterbach-Bahl, M. Englisch, K. Katzensteiner, M. Lexer, F. Strebl, and S. Zechmeister-Boltenstern, Nitrogen dynamics of a mountain forest on dolomitic limestone – A scenario-based risk assessment, Environmental Pollution, 155(3), 512-516, 2008.
18. Kartha, S. A. and R. Srivastava, Effect of immobile water content on contaminant transport in unsaturated zone, Journal of Hydro-Environment Research, 1(3), 206-215, 2008.
19. Kluge, B., G. Wessolek, M. Facklam, M. Lorenz, K. Schwärzel, Long-term carbon loss and CO2-C release of drained peatland soils in northeast Germany, European Journal of Soil Science, 59(6), 1076-1086, 2008.
20. Li, Z., D. Yuansheng, and H. Hanlie, Transport of micelles of cationic surfactants through clinoptilolite zeolite, Microporous and Mesoporous Materials, 116(1-3), 473-477, 2008.
21. Kodešová, R., M. Kočárek, V. Kodeš, J. Šimůnek, and J. Kozák, Impact of soil micromorphological features on water flow and herbicide transport in soils, Vadose Zone Journal, doi:10.2136/VZJ2007.0079, Special Issue “Vadose Zone Modeling”, 7(2), 798-809, 2008.
22. Loukili, Y., A. D. Woodbury, and K. R. Snelgrove, SABAE-HW: An enhanced water balance prediction in the canadian land surface scheme compared with existing models, Vadose Zone J. , 7, doi:10.2136/vzj2007.0081, 865–877, 2008.
23. Ma, D. & Mingan Shao, Simulating infiltration into stony soils with a dual-porosity model, Europ. J. Soil Sci., OnlineEarly Articles, Published article online: 23-May-2008, doi: 10.1111/j.1365-2389.2008.01055.x, 2008.
24. Nehls, T., G. Jozefaciuk, Z. Sokolowska, M. Hajnos, and G. Wessolek, Filter properties of seam material from paved urban soils, Hydrol. Earth Syst. Sci., 12, 691–702, 2008.
25. Novak, V., and M. Th. van Genuchten, Using the transpiration regime to estimate biomass production, Soil Science, 173(6), 401-407, 2008.
26. Pang, L., M. McLeod, J. Aislabie, J. Šimůnek, M. Close, and R. Hector, Modeling transport of fecal coliforms and Salmonella bacteriophage in ten undisturbed New Zealand soils under dairy shed effluent irrigation, Vadose Zone Journal , 7(1), 97-111, 2008.
27. Selle, B., G. Lischeid, and B. Huwe, Effective modelling of percolation at the landscape scale using data-based approaches, Computers and Geosciences, 34(6), 699-713, 2008.
28. Sharma, P., H. M. Abdou, and M. Flury, Effect of the lower boundary condition and flotation on colloid mobilization in unsaturated sandy sediments, Vadose Zone J., 7, 930-940, 2008.
29. Šimůnek, J. J. M. Köhne, R. Kodešová, and M. Šejna, Simulating nonequilibrium movement of water, solutes, and particles using HYDRUS: A review of recent applications, Soil and Water Research, 3(Special Issue 1), S42-S51, 2008.
30. Šimůnek, J., M. Th. van Genuchten, and M. Šejna, Development and applications of the HYDRUS and STANMOD software packages, and related codes, Vadose Zone Journal, doi:10.2136/VZJ2007.0077, Special Issue “Vadose Zone Modeling”, 7(2), 587-600, 2008.
31. Šimůnek, J. and M. Th. van Genuchten, Modeling nonequilibrium flow and transport with HYDRUS, Vadose Zone Journal, doi:10.2136/VZJ2007.0074, Special Issue “Vadose Zone Modeling”, 7(2), 782-797, 2008.
32. Suleiman, A. A., Modeling daily soil water dynamics during vertical drainage using the incoming flow concept, Catena, 73(3), 312-320, 2008.
33. Tazehkand, S. S., S. Torkzaban, S. A. Bradford, and S. L. Walker, Cell Preparation Methods Influence Escherichia coli D21g Surface Chemistry and Transport in Saturated Sand, J. Environ. Qual., 37, 2108–2115, 2008.
34. Torkzaban, S., Bradford, S. A., M. Th. van Genuchten, S. L. Walker, Colloid transport in unsaturated porous media: The role of water content and ionic strength on particle straining, J. Contam. Hydrology, 96, 113–127, 2008.
35. Tripp, D. R., and J. D. Niemann, Evaluating the parameter identifiability and structural validity of a probability-distributed model for soil moisture, Journal of Hydrology, 353(1), 93-108, 2008.
36. Twarakavi, N. K. C., H. Saito, and J. Šimůnek, A new approach to estimate soil hydraulic parameters using only soil water retention data, doi:10.2136/sssaj2006.0342, Soil Sci. Soc. Am. J., 72(2), 471-479. 2008.
37. Twarakavi, N. K. C., J. Šimůnek, and H. S. Seo, Evaluating interactions between groundwater and vadose zone using HYDRUS-based flow package for MODFLOW, Vadose Zone Journal, doi:10.2136/VZJ2007.0082, Special Issue “Vadose Zone Modeling”, 7(2), 757-768, 2008.
38. Valiantzas, J. D., and P.A. Londra, Direct determination of the Brooks–Corey hydraulic functions by fitting an extended power function to the outflow method data, Journal of Hydrology, 362(1-2), 128-133, 2008.
39. van der Grift, B. and J. Griffioen, Modelling assessment of regional groundwater contamination due to historic smelter emissions of heavy metals, Journal of Contaminant Hydrology, 96(1), 48-68, 2008.
40. Vrugt, J. A., P. H. Stauffer, T. Wohling, B. A. Robinson, and V. V. Vesselinov, Inverse modeling of subsurface flow and transport properties: A review with new developments, Vadose Zone Journal, 7(2), 843-864, 2008.
41. Wissmeier, L., and D. A. Barry, Reactive transport in unsaturated soil: Comprehensive modeling of the dynamic spatial and temporal mass balance of water and chemical components, Adv. Water Resour., 31(5), 858-875, 2008.
42. Wöhling, T., J. A. Vrugt, and G. F. Barkle, Comparison of three multiobjective optimization algorithms for inverse modeling of vadose zone hydraulic properties, Soil Sci. Soc. Am. J., 72(2), 305-319, 2008.
43. Yin, J., M. H. Young, and Z. B. Yu, Effects of paleoclimate and time-varying canopy structures on paleowater fluxes, Journal Of Geophysical Research-Atmospheres, 113(D6), Art. No. D06103, 2008.
44. Zeng, Y., L. Wan, Z, Su, H. Saito, K. Huang, and X. Wang, Diurnal soil water dynamics in the shallow vadose zone (field site of China University of Geosciences, China), Environ. Geol., DOI 10.1007/s00254-008-1485-8, 2008.

2007

1. Araki, M., A. Shimizu, J. Toriyama, E. Ito, N. Kabeya, T. Nobuhiro, B. Tith, S. Pol, S. Lim, S. Khorn, P. Pith, S. Det, S. Ohta, and M. Kanzaki, Changes of Vertical Soil Moisture Conditions of a Dry Evergreen Forest in Kampong Thom, Cambodia, In H. Sawada, M. Araki, N.A. Chappell, J.V. LaFrankie, A. Shimizu (Eds.), Forest Environments in the Mekong River Basin, Springer Japan, ISBN 978-4-431-46500-3, 75-86, 2007.
2. Bumgarner, J. R., and J. E. McCray, Estimating biozone hydraulic conductivity in wastewater soil-infiltration systems using inverse numerical modeling, Water Research, 41(11), 2349-2360, 2007.
3. Communar, G. and R. Keren, Effect of transient irrigation on boron transport in soils, Soil Sci. Soc. Am. J., 71, 306–313, 2007.
4. Dahiya, R., J. Ingwersen, and T. Streck, The effect of mulching and tillage on the water and temperature regimes of a loess soil: Experimental findings and modeling, Soil & Tillage Research, 96(1), 52-63, 2007.
5. Dousset, S., M. Thevenot, V. Pot, J. Šimůnek, and F. Andreux, Evaluating equilibrium and non-equilibrium transport of bromide and isoproturon in disturbed and undisturbed soil columns, J. Contam. Hydrol., 94, 261-276, 2007.
6. Fan, Z., F. X. M. Casey, H. Hakk, and G. L. Larsen, Discerning and modeling the fate and transport of testosterone in undisturbed soil, J. Environ. Qual., 36, 864-873, 2007.
7. Foppen, J. W., M. van Herwerden, and J. Schijven, Measuring and modelling straining of Escherichia coli in saturated porous media, J. Contam Hydrology, 93(1-4), 236-254, 2007.
8. Gargiulo, G., S. A. Bradford, J. Šimůnek, P. Ustohal, H. Vereecken, and E. Klumpp, Transport and deposition of metabolically active and stationary phase Deinococcus Radiodurans in unsaturated porous media, Environ. Sci. and Technol., 41(4), 1265-1271, 2007.
9. Gargiulo, G., S. A. Bradford, J. Šimůnek, P. Ustohal, H. Vereecken, and E. Klumpp, Bacteria transport and deposition under unsaturated conditions: the role of the matrix grain size and the bacteria surface protein, J. Contam. Hydrology, 92 doi: 10.1016/j.jconhyd.2007.01.009, 255-273, 2007.
10. Heatwole, K. K. and J. E. McCray, Modeling potential vadose-zone transport of nitrogen from onsite wastewater systems at the development scale, J. Contam. Hydrology, 91(1-2), 184–201, 2007.
11. Hu, K. L., B. G. Li, Y. Chen, and Y. Q Guo, Coupled simulation on crop growth and soil water-heat-nitrogen transport. I. Model, J. Hydraul. Eng., 38(7), 779-785, 2007 (in Chinese).
12. Hu, K. L., R. E. White, D. L. Chen, B. G. Li, and W. D. Li, Stochastic simulation of water drainage at the field scale and its application to irrigation management, Agricultural Water Management, 89(1-2), 123-130, 2007.
13. Ibrakhimov, M., A. Khamzina, I. Forkutsa, G. Paluasheva, J. P. A. Lamers, B. Tischbein, P. L. G. Vlek, and C. Martius, Groundwater table and salinity: Spatial and temporal distribution and influence on soil salinization in Khorezm region (Uzbekistan, Aral Sea Basin), Irrig Drainage Syst, 21, 219–236, 2007.
14. Jin, L, K. L. Hu, B. G. Li, and Y. S. Gong, Coupled simulation on crop growth and soil water-heat-nitrogen transport. I. Model validation and application, J. Hydraul. Eng., 38(8), 972-980, 2007 (in Chinese).
15. Leij, F. J., A. Sciortino, R. Haverkamp, J. M. Soria Ugalde, Aggregation of vertical flow in the vadose zone with auto- and cross-correlated hydraulic properties, Journal of Hydrology, 338 (1), 96-112, 2007.
16. Lewandowska, J., T. N. Dung, M. Vauclin, H. Bertin, Water drainage in double-porosity soils: experiments and micro-macro modeling, J. Geotech. Geoenviron. Eng., 2007.
17. Lu, X. H., and M. G. Jin, One-dimensional unsaturated flow modeling in Luan representative zone of the North China plain, Journal Of China University Of Geosciences, 18, 59-61 Sp. Iss., SI, 2007.
18. Nahlawi, H., A. Bouazza, and J. Kodikara, Characterisation of geotextiles water retention using a modified capillary pressure cell, Geotextiles and Geomembranes, 25(3), 186-193, 2007.
19. Ndiaye, B., J. Molenat, V. Hallaire, C. Gascuel, and Y. Hamon, Y., Effects of agricultural practices on hydraulic properties and water movement in soils in Brittany (France), Soil & Tillage Research, 93(2), 251-263, 2007.
20. Papiernik, S. K., S. R. Yates, W. C. Koskinen, and B. Barber, Processes affecting the dissipation of the herbicide isoxaflutole and its diketonitrile metabolite in agricultural soils under field conditions. Journal of Agricultural and Food Chemistry, 55(21), 8630-8639, 2007.
21. Saito, H., J. Šimůnek, and N. Toride, Prediction of long-term changes in soil water content and temperature in bare soils: Determining surface boundary conditions from estimated meteorological information, J. Jpn. Soc. Soil Physics, 107, 79-96, 2007.
22. Shah, N., N. Mahmood, and M. Ross, Extinction depth and evapotranspiration from ground water under selected land covers, Ground Water, 45(3), 329-338, 2007.
23. Suárez, F., J. Bachmann, J. F. Muñoz, C. Ortiz, S. W. Tyler, C. Alister, M. Kogan, Transport of simazine in unsaturated sandy soil and predictions of its leaching under hypothetical field conditions, J. Contam. Hydrology, 94, 166–177, 2007.
24. Tsang, D. C. W., W. Zhang, I. M. C. Lo, Modeling Cadmium transport in soils using sequential extraction, batch, and miscible displacement experiments, Soil Sci. Soc. Amer. J., 71(3), 674-681, 2007.
25. Valiantzas, J. D., P. Londra, and A. Sassalou, Explicit formulae for soil water diffusivity using the one-step outflow technique, Soil Sci. Soc. Am. J., 71, 1685–1693, 2007.
26. Warrick, A. W., and N. Lazarovitch, Infiltration from a strip source, Water Resour. Res., 43, W03420, doi:10.1029/2006WR004975, 2007.
27. Warrick, A. W., N. Lazarovitch, A. Furman; and D. Zerihun, Explicit infiltration function for furrows, Journal of Irrigation and Drainage Engineering, 133(4), 307-313, 2007.
28. Watanabe, K., N. Toride, M. Sakai, and J. Šimůnek, Numerical modeling of water, heat, and solute transport during soil freezing, J. Jpn. Soc. Soil Physics, 106, 21-32, 2007.
29. Wehrhan, A., R. Kasteel, J. Šimůnek, J. Groeneweg, H. Vereecken, Transport of sulfadiazine in soil columns – experiments and modeling approaches, J. Contam. Hydrology, 89(1-2), 107-135, 2007.
30. Zakerinia, M., F. Abbasi, and T. Sohrabi, Evaluating Temporal Variations of Soil Hydraulic Conductivity Using Inverse Optimization Technique, Journal of Agricultural Engineering Research, 8(3), 17-30, in Persian with English abstract, 2007.
31. Zhang, H. M., B. Y. Su, P. H. Liu, and W. Zhang, Experimental Study of Fluorine Transport Rules in Unsaturated Stratified Soil, Journal of China University of Mining and Technology, 17(3), 382-386, 2007.
32. Zlotnik, V. A., T. Wang, J. Nieber, and J. Šimůnek, Verification of numerical solutions of the Richards equation using a traveling wave solution, Advances in Water Resources, 30, 1973-1980, 2007.

2006

1. Bahaminyakamwe, L., J. Šimůnek, J. Dane, J. F. Adams, and J. W. Odom, Copper mobility in soils as affected by sewage sludge and low molecular weight organic acids, Soil Sci., 171(1), 29-38, 2006.
2. Bertling S., F. Degryse, I. O. Wallinder, E. Smolders, C. Leygraf, Model studies of corrosion-induced copper runoff fate in soil, Environmental Toxicology and Chemistry, 25(3), 683-691, 2006.
3. Bradford, S. A., J. Šimůnek, and S. L. Walker, Transport and straining of E. coli O157:H7 in saturated porous media, Water Resour. Res., 42, W12S12, doi:10.1029/2005WR004805, 12 pp., 2006.
4. Bradford, S. A., Y. F. Tadassa, and Y. Pachepsky, Transport of Giardia and manure suspensions in saturated porous media, J. Environ. Qual., 35, 749-757, 2006.
5. Bradford, S. A., Y. F. Tadassa, and Y. Jin, Transport of coliphage in the presence and absence of manure suspension, J. Environ. Qual., 35, 1692-1701, 2006.
6. Bradford, S. A., and M. Bettahar, Concentration dependent transport of colloids in saturated porous media, Journal of Contaminant Hydrology, 82(1), 99-117, 2006.
7. Butters, G. L., and P. Duchateau, Continuous flow method for rapid measurement of soil hydraulic properties, Vadose Zone J., 1, 239-251, 2006.
8. Das, N. N. and B. P. Mohanty, Root Zone Soil Moisture Assessment Using Remote Sensing and Vadose Zone Modeling, Vadose Zone Journal, 5, 296–307, 2006.
9. Degryse, F., and E. Smolders, Mobility of Cd and Zn in polluted and unpolluted Spodosols, Europ. J. Soil Sci., 57(2), 122–133, 2006.
10. Dontsova, K. M., S. L. Yost, J. Šimůnek, J. C. Pennington, C. Williford, Dissolution and transport of TNT, RDX, and Composition B in saturated soil columns, J. of Environ. Quality, 35, 2043-2054, 2006.
11. Fan, Z., F. X. M. Casey, G. L. Larsen, and H. Hakk, Fate and transport of 1278-TCDD, 1378-TCDD, and 1478-TCDD in soil-water systems, Science of the Total Environment, 371(1), 323-333, 2006.
12. Guber, A. K., Ya. A. Pachepsky, M. Th. van Genuchten, W. J. Rawls, J. Šimůnek, D. Jacques, T. J. Nicholson, and R. E. Cady, Field-scale water flow simulations using ensembles of pedotransfer functions for soil water retention, Vadose Zone Journal, 5, 234–247, 2006.
13. Hansson K., and L. C. Lundin, Equifinality and sensitivity in freezing and thawing simulations of laboratory and in situ data, Cold Regions Science and Technology, 44(1), 20-37, 2006.
14. Javaux, M. R. Kasteel, J. Vanderborght, and M. Vanclooster, Interpretation of dye transport in a macroscopically heterogeneous, unsaturated subsoil with a one-dimensional model, Vadose Zone Journal, 5, 529–538, 2006.
15. Kodešová, R., J. Kozák, and J. Šimůnek Numerical study of macropore impact on ponded infiltration in clay soils, Soil and Water Research, 1(1), ISSN 1801-5395, 16-22, 2006.
16. Kodešová, R., V. Kodeš, A. Žigová and J. Šimůnek, Impact of plant roots and soil organisms on soil micromorphology and hydraulic properties, Biologia, 61/Suppl. 19, S339-S343, 2006.
17. Köhne, S., B. Lennartz, J. M. Köhne, and J. Šimůnek, Bromide transport at a tile-drained field site: experiment, one- and two-dimensional equilibrium and non-equilibrium numerical modeling, J. Hydrology, 321(1-4), 390-408, 2006.
18. Köhne, J. M., S. Köhne, and J. Šimůnek, Multi-process herbicide transport in structured soil columns: Experiment and model analysis, J. Contam. Hydrology, 85, 1-32, 2006.
19. Köhne, J. M., B. P. Mohanty, and J. Šimůnek, Inverse dual-permeability modeling of preferential water flow in a soil column and implications on field-scale solute transport prediction, Vadose Zone Journal, 5, 59-76, 2006.
20. Li, Zhaohui, C. Willms, J. Alley, P. Zhang, R. S. Bowman, A shift in pathway of iron-mediated perchloroethylene reduction in the presence of sorbed surfactant - A column study, Water Research, 40(20), 3811-3819, 2006.
21. Lopez-Perez G. C., M. Arias-Estevez, E. Lopez-Periago, B. Soto-Gonzalez, B. Cancho-Grande, and J. Simal-Gandara, Dynamics of pesticides in potato crops, Journal of Agricultural and Food Chemistry, 54(5), 1797-1803, 2006.
22. Nakajima, H. and A. T. Stadler, Centrifuge modeling of one-step outflow tests for unsaturated parameter estimations, Hydrol. Earth Syst. Sci., 10, 715–729, 2006.
23. Pachepsky, Y., A. Guber, D. Jacques, J. Šimůnek, M. Th. van Genuchten, T. Nicholson, R. Cady, Information content and complexity of simulated soil water fluxes, Geoderma, 134, 253-266, 2006.
24. Pang, L. and J. Šimůnek, Evaluation of bacteria-facilitated cadmium transport in gravel columns using the HYDRUS colloid-facilitated solute transport model, Water Resour. Res., 42, W12S10, doi:10.1029/2006WR004896, 2006.
25. Pernyeszi T., R. Kasteel, B. Witthuhn, P. Klahre, H. Vereecken, and E. Klumpp, Organoclays for soil remediation: Adsorption of 2,4-dichlorophenol on organoclay/aquifer material mixtures studied under static and flow conditions, Applied Clay Science, 32(3-4), 179-189, 2006.
26. Rumburg, B., G. H. Mount, D. Yonge, B. Lamb, H. Westberg, J. Filipy, J. Bays, R. Kincaid, and K. Johnson, Atmospheric flux of ammonia from sprinkler application of dairy waste, Atmospheric Environment, 40(37), 7246-7258, 2006.
27. Saito, H., J., J. Šimůnek, and B. Mohanty, Numerical analyses of coupled water, vapor and heat transport in the vadose zone, Vadose Zone Journal, 5, 784–800, 2006.
28. Saito, H., M. Sakai, J. Šimůnek, and N. Toride, Boundary conditions for numerical analysis of variably-saturated water flow in soils, J. Jpn. Soc. Soil Phys., 104, 63-73, 2006.
29. Sangsupan H. A., D. E. Radcliffe, P. G. Hartel, M. B., Jenkins, W. K. Vencill, and M. L. Cabrera, Sorption and transport of 17 beta-estradiol and testosterone in undisturbed soil columns, Journal of Environmental Quality, 35(6), 2261-2272, 2006.
30. Sarmah A. K., M. E. Close, R. Dann, L. Pang L, and S. R. Green, Parameter estimation through inverse modelling and comparison of four leaching models using experimental data from two contrasting pesticide field trials in New Zealand, Australian Journal of Soil Research, 44(6), 581-597, 2006.
31. Schoups, G., and J. W. Hopmans, Evaluation of model complexity and input uncertainty of field-scale water flow and salt transport, Vadose Zone Journal, 5, 951–962, 2006.
32. Schwartz, M. O., A. Schippers, and L. Hahn, Hydrochemical models of the sulphidic tailings dumps at Matchless (Namibia) and Selebi-Phikwe (Botswana), Environmental Geology, 49(4), 504-510, 2006.
33. Schwärzel, K., J. Šimůnek, H. Stoffregen, G. Wessolek, and M. Th. van Genuchten, Estimation of the unsaturated hydraulic conductivity of peat soils: laboratory versus field data, Vadose Zone Journal, 5, 628-640, 2006.
34. Schwärzel, K., J. Šimůnek, M. Th. van Genuchten, and G. Wessolek, Measurement and modeling of soil water dynamics and evapotranspiration in disturbed peatland soils, Journal of Plant Nutrition and Soil Science, 169, 762-774, 2006.
35. Šimůnek, J., Changming He, J. L. Pang, and S. A. Bradford, Colloid-facilitated transport in variably-saturated porous media: Numerical model and experimental verification, Vadose Zone Journal, 5, 1035-1047, 2006.
36. Šimůnek, J., D. Jacques, M. Th. van Genuchten, and D. Mallants, Multicomponent geochemical transport modeling using the HYDRUS computer software packages, J. Am. Water Resour. Assoc., 42(6), 1537-1547, 2006.
37. Skaggs, T. H., P. J. Shouse, and J. A. Poss, Irrigating Forage Crops with Saline Waters. 2. Modeling Root Uptake and Drainage, Vadose Zone J., 5, 824-837, 2006.
38. Thomasson, M. J., P. J. Wierenga, and T. P. A. Ferre, A Field Application of the Scaled-Predictive Method for Unsaturated Soil, Vadose Zone Journal, 5, 1093–1109, 2006.
39. Weihermuller L., R. Kasteel, and H. Vereecken, Soil heterogeneity effects on solute breakthrough sampled with suction cups: Numerical simulations, Vadose Zone Journal, 5(3), 886-893, 2006.
40. Werner A. D., and D. A. Lockington, Artificial pumping errors in the Kool-Parker scaling model of soil moisture hysteresis, Journal of Hydrology, 325(1-4), 118-133, 2006.

2005

1. Bradford, S. A., and M. Bettahar, Straining, attachment, and detachment of cryptosporidium oocysts in saturated porous media, J. Environ. Qual., 34, 469-478, 2005.
2. Bradford, S. A., J. Šimůnek, M. Bettahar, Yadata Tadassa, M. Th. van Genuchten, and S. R. Yates, Straining of Colloids at Textural Interfaces, Water Resour. Res., 41, W10404, doi:10.1029/2004WR003675, 17 pp, 2005.
3. Casey, F. X. M., J. Šimůnek, J. Lee, G. L. Larsen, and H. Hakk, Sorption, mobility, and transformation of estrogenic hormones in natural soil, J. of Environ. Quality, 34, 1372-1379, 2005.
4. Haws, N. W., P. S. C. Rao, J. Šimůnek, and I. C Poyer, Single-porosity and dual-porosity modeling of water flow and solute transport in subsurface-drained fields using effective field-scale parameters, J. of Hydrology , 313(3-4), 257-273, 2005.
5. Kelleners, T. J., R. W. O. Soppe, J. E. Ayars, T. H. Skaggs, and J. Šimůnek, Inverse analysis of upward water flow in a groundwater table lysimeter, Vadose Zone Journal, 4, 558–572, 2005.
6. Kodešová, R., J. Kozák, J. Šimůnek, and O. Vacek, Single and dual-permeability models of chlorotoluron transport in the soil profile, Plant, Soil and Environment, 51(7), ISSN 1214-1178, 310-315, 2005.
7. Moradi A., K. C. Abbaspour, and M. Afyuni, Modelling field-scale cadmium transport below the root zone of a sewage sludge amended soil in an arid region in Central Iran, Journal of Contaminant Hydrology, 79(3-4), 187-206, 2005.
8. Pot, V., J. Šimůnek, P. Benoit, Y. Coquet, A. Yra and M.-J. Martínez-Cordón, Impact of rainfall intensity on the transport of two herbicides in undisturbed grassed filter strip soil cores. J. of Contaminant Hydrology, 81, 63-88, 2005.
9. Sarmah A. K., M. E. Close, L. P. Pang, R. Lee, and S. R. Green, Field study of pesticide leaching in a Himatangi sand (Manawatu) and a Kiripaka bouldery clay loam (Northland). 2. Simulation using LEACHM, Hydrus-1D, GLEAMS, and SPASMO models, Australian Journal of Soil Research, 43(4), 471-489, 2005.
10. Schoups, G., C. Lee Addams, and S. M. Gorelick, Multi-objective calibration of a surface water-groundwater flow model in an irrigated agricultural region: Yaqui Valley, Sonora, Mexico, Hydrology and Earth System Sciences, 9, 549–568, 2005.
11. Schoups, G., J. W. Hopmans, C. A. Young, J.A. Vrugt, W. W. Wallender, Multi-criteria optimization of a regional spatially-distributed subsurface water flow model, J. Hydrology, 311, 20–48, 2005.
12. Šimůnek, J. and J. R. Nimmo, Estimating soil hydraulic parameters from transient flow experiments in a centrifuge using parameter optimization technique, Water Resour. Res., 41(4), W04015, doi:10.1029/2004WR003379, 2005.
13. Vanderborght J., R. Kasteel, M. Herbst, M. Javaux, D. Thiery, M. Vanclooster, C. Mouvet, and H. Vereecken,A set of analytical benchmarks to test numerical models of flow and transport in soils, Vadose Zone Journal, 4(1), 206-221, 2005.
14. van der Velde M., S. R. Green, G. W. Gee, M. Vanclooster, and B. E. Clothier, Evaluation of drainage from passive suction and nonsuction flux meters in a volcanic clay soil under tropical conditions, Vadose Zone Journal, 4(4), 1201-1209, 2005.
15. Wang, Sh.-X., J.-L. Zhou, F. Yu, and X.-G. Dong, Application of HYDRUS-1D Model to evaluating soil water resource, Research of Soil and Water Conservation, 12(2), 36-38, 2005.
16. Xu L. G., J. S. Yang, Q. Zhang, and G. M. Liu, Salt-water transport in unsaturated soils under crop planting: Dynamics and numerical simulation, Pedosphere, 15(5), 634-640, 2005.
17. Zerihun, D., A. Furman, W.A. Warrick, and C.A. Sanchez, A coupled surface-subsurface flow model for improved basin irrigation management, Journal of Irrigation and Drainage Engineering, American Society of Civil Engineers, 131(2), 111-128, 2005.
18. Zerihun, D., A. Furman, A. W. Warrick, and C. A. Sanchez, Coupled surface-subsurface solute transport model for irrigation borders and basins. I. Model development, Journal of Irrigation and Drainage Engineering, American Society of Civil Engineers, 131(5), 396-406, 2005.
19. Zerihun, D., C. A. Sanchez, A. Furman, and A. W. Warrick, Coupled surface-subsurface solute transport model for irrigation borders and basins. II. Model evaluation, Journal of Irrigation and Drainage Engineering, American Society of Civil Engineers, 131(5), 407-419, 2005.

2004

1. Casey, F. X. M., G. L. Larsen, H. Hakk, and J. Šimůnek, Fate and transport of testosterone in agriculturally significant soils. Environ. Sci. Technol., 38(3), 790-798, 2004.
2. Gerke, H. H. and J. M. Köhne, Dual-permeability modeling of preferential bromide leaching from a tile-drained glacial till agricultural field, J Hydrology, 289(1-4), 239-257, 2004.
3. Hansson, K., J. Šimůnek, M. Mizoguchi, L.-Ch. Lundin, Water flow and heat transport in frozen soil: Numerical solution and freeze/thaw applications, Vadose Zone Journal, 3(2), 693-704, 2004.
4. Kodesova R., J. Kozak, and O. Vacek, Field and numerical study of chlorotoluron transport in the soil profile, Plant Soil and Environment, 50(8), 333-338, 2004.
5. Köhne, J. M., B. Mohanty, J. Šimůnek, and H. H. Gerke, Numerical evaluation of a second-order water transfer term for variably saturated dual-permeability models, Water Resour. Res., 40, doi:10.1029/2004WR00385, 2004.
6. Köhne, J. M., S. Köhne, B. P. Mohanty, and J. Šimůnek, Inverse mobile-immobile modeling of transport during transient flow: Effect of between-domain transfer and initial water content, Vadose Zone Journal, 3(4), 1309-1321, 2004.
7. Meng, J.-L., X.-G. Dong, J.-L. Zhou, and J.-L. Li, Application of HYDRUS model to study of relation between irrigation and soil salinity in the arid area, Journal of Xinjiang Agricultural University, 27(1), 45-49, 2004.
8. Moroizumi, T. and H. Horino, Tillage effects on subsurface drainage, Soil Sci. Soc. Am. J., 68, 1138–1144, 2004.
9. Sommer, R., P. L. G. Vlek, T. Deane de Abreu, K. Vielhauer, R. de Fátima Rodrigues Coelho, and H. Fölster, Nutrient balance of shifting cultivation by burning or mulching in the Eastern Amazon – evidence for subsoil nutrient accumulation, Nutrient Cycling in Agroecosystems, 68, 257–271, 2004.
10. Vrugt, J. A., G. Schoups, J. W. Hopmans, C. Young, W. W. Wallender, T. Harter, and W. Bouten, Inverse modeling of large-scale spatially distributed vadose zone properties using global optimization, Wat. Resour. Res., 40, W06503, doi:10.1029/2003WR002706, 2004.
11. Zhang, P., J. Šimůnek, and R. S. Bowman, Nonideal transport of solute and colloidal tracers through reactive zeolite/iron pellets, Water Resour. Res., 40, doi:10.1029/2003WR002445, 2004.

2003

1. Bi, J.-W., J.-B. Zhang, X.-M. Chen, An.-N. Zhu, and J. Feng, Modeling of soil water drainage and nitrate N leaching in arable soil, Journal of Irrigation and Drainage, 22(6), 23-26, 2003.
2. Bradford, S. A., J. Šimůnek, M. Bettehar, M. Th. van Genuchten, and S. R. Yates, Modeling colloid attachment, straining, and exclusion in saturated porous media, Environ. Sci. Technol., 37(10), 2242-2250, 2003.
3. Cau, Q. H. and Y. S. Gong, Simulation and analysis of water balance and nitrogen leaching using Hydrus-1D under winter wheat crop, Plant Nutr. Fert. Sci., 9(2) 139-145, 2003 (in Chinese).
4. Casey, F. X. M., G. L. Larsen, H. Hakk, and J Šimůnek, Fate and transport of 17ß-Estradiol in soil-water systems, Environ. Sci. Technol., 37(11), 2400-2409, 2003.
5. Castiglione, P., B. P. Mohanty, P. J. Shouse, J. Šimůnek, M. Th. van Genuchten, and A. Santini, Lateral water diffusion in an artificial macroporous system: Theory and experimental evidence, Vadose Zone Journal, 2, 212-221, 2003.
6. Hammecker, C., A. C. D. Antonino, J. L. Maeght, And P. Boivin, Experimental and numerical study of water flow in soil under irrigation in northern Senegal: evidence of air entrapment, Europ. J. Soil Sci., 54(3), 491–503, 2003.# Heistermann M., B. Jene, G. Fent, M. Feyerabend, R. Seppelt, O. Richter, and R. Kubiak R, Modelling approaches to compare sorption and degradation of metsulfuron-methyl in laboratory micro-lysimeter and batch experiments, Pest Management Science, 59(12), 1276-1290, 2003.
7. Scanlon, B., K. Keese, R. C. Reedy, J. Šimůnek, and B. Andraski, Variations in flow and transport in thick desert vadose zones in response to paleoclimatic forcing (0 – 90 kyr): Monitoring, modeling, and uncertainties, Water Resour. Res. 39(7), 1179, doi:10.1029/2002WR001604, 13.1-13.7, 2003.
8. Šimůnek, J., N. J. Jarvis, M. Th. van Genuchten, and A. Gärdenäs, Review and comparison of models for describing non-equilibrium and preferential flow and transport in the vadose zone, Journal of Hydrology, 272, 14-35, 2003.
9. Sommer R., H. Folster, K. Vielhauer, E. J. M. Carvalho, and P. L. G. Vlek, Deep soil water dynamics and depletion by secondary vegetation in the Eastern Amazon, Soil Science Society of America Journal, 67(6), 1672-1686, 2003.
10. Thomasson, M. J., and J. Wierenga, Spatial variability of the effective retardation factor in an unsaturated field soil, J Hydrology, 272(1-4), 213-225, 2003.

2002

1. Bradford, S. A., S. R. Yates, M. Bettehar, and J. Šimůnek, Physical factors affecting the transport and fate of colloids in saturated porous media, Water Resour. Res., 38(12), 1327, doi:10.1029/2002WR001340, 63.1-63.12, 2002.
2. Hermsmeyer D, J. Ilsemann, J. Bachmann, R. R. van der Ploeg, and R. Horton, Model calculations of water dynamics in lysimeters filled with granular industrial wastes, J. of Plant Nutrition and Soil Science (Zeitschrift Fur Pflanzenernahrung Und Bodenkunde), 165(3), 339-346, 2002.
3. Jacques, D., Modelling the interaction of Boom Clay with an alkaline plume using the reactive transport model PHREEQC, IR-0009, Waste & Disposal SCK*CEN, Mol, Belgium, pp. 55, 2002.**
4. Jacques, D., J. Šimůnek, A. Timmerman, and J. Feyen, Calibration of Richards' and convection-dispersion equations to field-scale water flow and solute transport under rainfall conditions, J. of Hydrology, 259, 15-31, 2002.
5. Jandl, R., H. Spögler, J. Šimůnek, and L. K. Heng, Simulation of soil hydrology and establishment of a nitrogen budget of a mountain forest, Environmental Science & Pollution Research, 9(Special Issue 2), 42-45, 2002.
6. Kahle P., C. Criegee, and B. Lennartz, Willow stands as an alternative method for the reduction of leachate at contaminated sites - numerical investigations, J Plant Nutr Soil Sc, 165(4), 501-505, 2002.
7. Lee, J., S. Lakhwinder, S. Hundal, R. Horton, and M. L. Thompson, Sorption and transport behavior of naphthalene in an aggregated soil, J. Environ. Qual., 31, 1716–1721 2002.
8. Leij, F. J., and M. Th. van Genuchten, Solute Transport, Chapter 6 in: Soil Physics Companion, A. W. Warrick (eds.), CRC Press, New York, NY, 2002. **
9. Mertens J., D. Raes, and J. Feyen, Incorporating rainfall intensity into daily rainfall records for simulating runoff and infiltration into soil profiles, Hydrological Processes, 16(3), 731-739, 2002.
10. Scanlon, B. R., M. Christman, R. Reedy, I. Porro, J. Šimůnek, and G. Flerchinger, Intercode comparisons for simulating water balance of surficial sediments in semiarid regions, Water Resour. Res., 38(12), 1323, doi:10.1029/2001WR001233, 59.1-59.16, 2002.
11. Schijven, J., and J. Šimůnek, Kinetic modeling of virus transport at field scale, J. of Contam. Hydrology, 55(1 2), 113 135, 2002. **
12. Seuntjens, P., Field-Scale Cadmium Transport in a Heterogeneous Layered Soil, Water, Air, and Soil Pollution, 140, 401–423, 2002.
13. Seuntjens, P., D. Mallants, J. Šimůnek, J. Patyn, and D. Jacques, Sensitivity analysis of physical and chemical properties affecting field-scale cadmium transport in a heterogeneous soil profile, J. of Hydrology, 264, 185-200, 2002.
14. Vanderborght, J., P. Gähwiller, and H. Flühler, Identification of transport processes in soil cores using florescent tracers, Soil Sci. Soc. Am. J., 66, 774-787, 2002. **
15. Vrugt, J. A. and W. Bouten, Validity of first-order approximations to describe parameter uncertainty in soil hydrologic models, Soil Sci. Soc. Am. J., 66, 1740-1751, 2002.
16. Vrugt, J. A., W. Bouten, H. V. Gupta, and S. Sorooshian, Toward improved identifiability of hydrologic model parameters: The information content of experimental data, Water Resour. Res., 38(12), 1312, doi:10.1029/2001WR001118, 2002.
17. Wang, Q., R. Horton, and M. Shao, Horizontal infiltration method for determining brooks-corey model parameters, Soil Sci. Soc. Am. J., 66, 1733–1739, 2002.
18. Young, M., Karagunduz, A., J. Šimůnek, and K. D. Pennell, Modified upward infiltration method for characterizing soil hydraulic properties, Soil Sci. Soc. Am. J., 66, 57-64, 2002. **

2001

1. Casey, F. X. M., and J. Šimůnek, Inverse analyses of the transport of chlorinated hydrocarbons subject to sequential transformation reactions, J. of Environ. Quality, 30(4), 1354-1360, 2001. **
2. Diaw E. H. B., F. Lehmann, and P. Ackerer, Modeling a non-conservative solute transfer in unsaturated porous media, Comptes Rendus De L Academie Des Sciences Serie Ii Fascicule A-Sciences De La Terre Et Des Planetes, 333(2), 129-132, 2001.
3. Seuntjens, P., K. Tirez, J. Šimůnek, M. Th. van Genuchten, C. Cornelis, and P. Geuzens. Aging effects on cadmium transport in undisturbed contaminated sandy soil columns. Journal of Environmental Quality, 30, 1040-1050, 2001. **
4. Seuntjens, P., D. Mallants, C. Cornelis, and P. Geuzens, Nonequilibrium Cadmium leaching in layered sandy soils, Soil Sci., 166(8), 507-519, 2001.
5. Šimůnek, J., O. Wendroth, N. Wypler, and M. Th. van Genuchten, Nonequilibrium water flow characterized from an upward infiltration experiment, European J. of Soil Sci., 52(1), 13-24, 2001. *+
6. Vrugt, J.A., M. T. van Wijk, J. W. Hopmans, and J. Šimůnek, One-, two-, and three-dimensional root water uptake functions for transient modeling, Water Resour. Res., 37(10), 2457-2470, 2001. *
7. Wildenschild, D., J. W. Hopmans, and J. Šimůnek, Parameter estimation for variable-rate outflow experiments: Direct and inverse estimation approaches, Soil Sci. Soc. Am. J., 65(1), 35-48, 2001. *+

2000

1. de Vos J. A., D. Hesterberg, and P. A. C. Raats, Nitrate leaching in a tile-drained silt loam soil, Soil Sci. Soc. Am. J., 64(2), 517-527, 2000.
2. Inoue, M., J. Šimůnek, S. Shiozawa, and J. W. Hopmans, Estimation of soil hydraulic and solute transport parameters from transient infiltration experiments, Advances in Water Resources, 23, 677-688, 2000. **+
3. Li, G. H., Z. W. Tang, L. W. Mays, and P. Fox, New methodology for optimal operation of soil aquifer treatment systems, Water Resources Management, 14(1), 13-33, 2000.
4. Majdoub R., J. Gallichand, and J. Caron, Simulation of soil water flow based on the numerical method of lines, Canadian Agricultural Engineering, 42(2), 65-74, 2000.
5. Qualls, R. G., B. L. Haines, W. T. Swank, and S. W. Tyler, Soluble organic and inorganic nutrient fluxes in clearcut and mature deciduous forests, Soil Sci. Soc. Am. J., 64, 1068-1077, 2000. +
6. Scott, R. L., W. J. Shuttleworth, T. O. Keefer, and A. W. Warrick, Modeling multiyear observations of soil moisture recharge in the semiarid American Southwest, Water Resour. Rer., 36(8), 2233-2247, 2000. *
7. Scott R. L., W. J. Shuttleworth, T. O. Keefer, and A. W. Warrick, Modeling multiyear observations of soil moisture recharge in the semiarid American Southwest, Water Resources Research, 36(8), 2233-2247, 2000.
8. Šimůnek, J., J. W. Hopmans, M. Th. van Genuchten, and D. R. Nielsen, Horizontal infiltration revisited using parameter estimation, Soil Sci., 165(9), 708-717, 2000. **+
9. Ventrella, D., B. P. Mohanty, J. Šimůnek, N. Losavio, and M. Th. van Genuchten, Water and chloride transport in a fine-textured soil: Field experiments and modeling, Soil Sci., 165(8), 624-631, 2000. **+

1999

1. Šimůnek, J., and M. Th. van Genuchten, Using the Hydrus-1D and Hydrus-2D codes for estimating unsaturated soil hydraulic and solute transport parameters, in van Genuchten, M. Th., F. J. Leij, and L. Wu (eds.) Characterization and Measurement of the Hydraulic Properties of Unsaturated Porous Media, University of California, Riverside, CA, 1523-1536, 1999. *+
2. Šimůnek, J., O. Wendroth, and M. Th. van Genuchten, Estimating soil hydraulic properties from laboratory evaporation experiments by parameter estimation, in van Genuchten, M. Th., F. J. Leij, and L. Wu (eds.) Characterization and Measurement of the Hydraulic Properties of Unsaturated Porous Media, University of California, Riverside, CA, 713-724, 1999. *+
3. Vanderborght, J., Gahwiller, P., Bujukova, S., and H. Fluhler, Identification of transport processes from concentration patterns and breakthrough curves of fluorescent tracers, in J. Feyen and K. Wiyo (eds.) Modelling of Transport Process in Soils at Various Scales in Time and Space, Proc. of Intern. Workshop of EurAgEng's Field of Interest on Soil and Water, Leuven, Belgium, 24-26 November, 77-87, Wageningen Pers, Wageningen, The Netherlands, 1999. **+

1998

1. Liu, Q.-CH., and Sh.-Ch. Xie, A study on field soil water balance for summer corn in north China plain, Journal of Hydraulic Engineering, 1, 62-6, 1998.
2. Šimůnek, J., O. Wendroth, and M. Th. van Genuchten, A parameter estimation analysis of the evaporation method for determining soil hydraulic properties, Soil Sci. Soc. Am. J., 62(4), 894-905, 1998. *+

1997

1. Schwager, A., M. Boller, Transport phenomena in intermittent filters, Water Sci. Technol., 35(6), 13-20, 1997.

1996

1. Persicani D., Pesticide leaching into field soils: Sensitivity analysis of four mathematical models, Ecological Modelling, 84 (1-3), 265-280, 1996.

References of UNSATCHEM (incorporated into Hydrus-1D):

1. Šimůnek, J., and D. L. Suarez, Sodic soil reclamation using multicomponent transport modeling, ASCE J. Irrig. and Drain. Engineering, 123(5), 367-376, 1997.
2. Suarez, D. L., and J. Šimůnek, UNSATCHEM: Unsaturated water and solute transport model with equilibrium and kinetic chemistry, Soil Sci. Soc. Am. J., 61, 1633-1646, 1997.
3. Vaughan, P. J., D. L. Suarez, J. Šimůnek, D. L. Corwin, and J. D. Rhoades, Role of groundwater flow in variation of discharge from tile drain systems, J. Environ. Qual., 28, 403-410, 1999.
4. Kaledhonkar, M. J., N. K. Tyagi, and S. E. A. T. M. Van Der Zee, Solute transport modelling in soil for irrigation field experiments with alkali water, Agricultural Water Management, 51, 153-171, 2001.
5. Suarez, D. L., Soil sodic reclamation: Modelling and field study, Aust. J. Soil Res., 39, 1225-1246, 2001.
6. Schoups, G., J. W. Hopmans, C. A. Young, J. A. Vrugt, W. W. Wallender, K. K. Tanji, and S. Panday, Sustainability of irrigated agriculture in the San Joaquin Valley, California, doi: 10.1073/pnas.0507723102, Proc. Nat. Academy Sci., 102(43), 15352-15356, 2005.
7. Vaughan, P. J., P. J. Shouse, D. L. Suarez, M. Th. Van Genuchten, and J. E. Ayars, Analysis of field-scale salinization: A comparison of different modeling approaches, J. Hydrol. Hydromech., 53(2), 73–90, 2005.
8. Skaggs, T. H., P. J. Shouse, and J. A. Poss, Irrigation of forage crops with saline drainage waters: 1. Volumetric Lysimeter Studies, Vadose Zone J., 5, 8154–823, 2006.
9. Skaggs, T. H., P. J. Shouse, and J. A. Poss, Irrigation of forage crops with saline drainage waters: 2. Modeling drainage and root water uptake, Vadose Zone J., 5, 824–837, 2006.
10. Gonçalves, M. C., J. Šimůnek, T. B. Ramos, J. C. Martins, M. J. Neves, and F. P. Pires, Multicomponent solute transport in soil lysimeters irrigated with waters of different quality, Water Resour. Res., 42, W08401, doi:10.1029/2006WR004802, 17 pp., 2006.
11. Decker, D. L., J. Šimůnek, S. W. Tyler, Ch. Papelis, and M. Logsdon, Variably saturated reactive transport of arsenic in heap leach facilities, Vadose Zone Journal, 5, 430-444, 2006.
12. Schoups, G., J. W. Hopmans, and K. K. Tanji, Evaluation of model complexity and space–time resolution on the prediction of long-term soil salinity dynamics, western San Joaquin Valley, California, Hydrol. Process., 20, 2647–2668, 2006.
13. Corwin, D. L., J. D. Rhoades, J. Šimůnek, Leaching Requirement for Soil Salinity Control: Steady-State vs. Transient-State Models, Agric. Water Management, 2007.
14. Gonçalves, M. C., T. B. Ramos, J. Šimunek, M. J. Neves, J. C. Martins, F. P. Pires, and P. Leitão, Modelação da dinâmica da água e dos sais num Aluviossolo regado com águas de diferente qualidade: ensaio de validação do modelo HYDRUS-1D com observações em monólitos (Water and solute transport simulation in a Fluvisol irrigated with waters of different quality: testing the HYDRUS-1D model with observations in soil monoliths) (in Portugeese with English abstract), Rev. de Ciências Agrárias, 30(2), ISSN 0871-018X, 38-52, 2007.
15. Buchner, J. S., J. Šimůnek, J. Lee, D. E. Rolston, J. W. Hopmans, A. P. King, and J. Six, Evaluation of CO2 fluxes from an agricultural field using a process-based numerical model, J. Hydrology, doi: 10.1016/j.jhydrol.2008.07.035, 361(1-2), 131– 143, 2008.
16. Herbst, M., H. J. Hellebrand, J. Bauer, J. A. Huisman, J. Šimůnek, L. Weihermüller, A. Graf, J. Vanderborght, and H. Vereecken, Multiyear heterotrophic soil respiration: evaluation of a coupled CO2 transport and carbon turnover model, Ecological Modelling, 214, 271-283, 2008.
17. Bauer, J., M. Herbst, J. A. Huisman, L. Weihermüller, H. Vereecken, Sensitivity of simulated soil heterotrophic respiration to choice of temperature and moisture reduction functions, Geoderma, 145, 17-27, 2008.

References of HP1 (incorporated into Hydrus-1D):

1. Jacques, D., J. Šimůnek, D. Mallants, and M. Th. van Genuchten, Operator-splitting errors in coupled reactive transport codes for transient variably saturated flow and contaminant transport in layered soil profiles, J. Contam. Hydrology, 88, 197-218, 2006.
2. Šimůnek, J., D. Jacques, M. Th. van Genuchten, and D. Mallants, Multicomponent geochemical transport modeling using the HYDRUS computer software packages, J. Am. Water Resour. Assoc., 42(6), 1537-1547, 2006.
3. Jacques, D., J. Šimůnek, D. Mallants, and M. Th. van Genuchten, Modeling coupled hydrological and chemical processes: Long-term uranium transport following mineral phosphorus fertilization, Vadose Zone Journal, doi:10.2136/VZJ2007.0084, Special Issue “Vadose Zone Modeling”, 7(2), 698-711, 2008.
4. Jacques, D., J. Šimůnek, D. Mallants and M. Th. van Genuchten, Modelling coupled water flow, solute transport and geochemical reactions affecting heavy metal migration in a Podzol soil, Geoderma, doi:10.1016/j.geoderma.2008.01.009, 145, 449-461, 2008.
5. Jacques, D., L. Wang, E. Martens, and D. Mallants, Modelling chemical degradation of concrete during leaching with rain and soil water types, Cement and Concrete Research, 40(8), 1306-1313, 2010.