References

Hydrus-1D References

See also HYDRUS (2D/3D) selected references
If your publication is not on the list below, please email us the reference and/or send a PDF file. Thank you.

Unsatchem References
HP1 References

Hydrus-1D Selected References

Harzing's Publish or Perish: HYDRUS-1D: 1101 citations; Unsatchem: 72 citations (October 13, 2012).
Last update on January 14 2013.

2013

1. Bailey, R. T., E. D. Morway, R. G. Niswonger, and T. K. Gates, Ground Water, Modeling variably saturated multispecies reactive groundwater solute transport with MODFLOW-UZF and RT3D, Article first published online : 11 JAN 2013, DOI: 10.1002/ird.1699, 2013.
2. Bradford, S. A., V. L. Morales, W. Zhang, R. W. Harvey, A. Packman, A. Mohanram, and C. Welty, Transport and fate of microbial pathogens in agricultural settings, Critical Reviews in Environmental Sciences and Technology, 43(8), 775-893, doi: 10.1080/10643389.2012.710449, 2013.
3. Brankatschk, R., T. Fischer, M. Veste, and J. Zeyer, Succession of N cycling processes in biological soil crusts on a Central European inland dune, FEMS Microbiology Ecology, 83(1), 149–160, 2013.
4. Caldwell, T. G., T. Wöhling, M. H. Young, D. P. Boyle, and E. V. McDonald, Characterizing disturbed desert soils using multiobjective parameter optimization, Vadose Zone Journal, 12(1), doi:10.2136/vzj2012.0083, 23 pp., 2013.
5. Chen, M., G. R. Willgoose, and P. M. Saco, Spatial prediction of temporal soil moisture dynamics using HYDRUS-1D, Hydrological Processes, Article first published online : 23 OCT 2012, DOI: 10.1002/hyp.9518, 2013.
6. Clervil, E., M. Usman, E. Emmanuel, V. Chatain, and K. Hanna, Sorption of nalidixic acid onto sediments under batch and dynamic flow conditions, Chemical Geology, 335, 63–74, 2013.
7. Hinckley, Eve-Lyn S., B. A. Ebel, R. T. Barnes, R. S. Anderson, M. W. Williams, and S. P. Anderson, Aspect control of water movement on hillslopes near the rain–snow transition of the Colorado Front Range, Hydrological Processes, Article first published online : 17 OCT 2012, DOI: 10.1002/hyp.9549, 2013.
8. Huang, M., P. G. Bruch, and S. L. Barbour, Evaporation and water redistribution in layered unsaturated soil profiles, Vadose Zone Journal, 12(1), doi:10.2136/vzj2012.0108, 14 pp., 2013.
9. Kasel, D., S. A. Bradford, J. Šimůnek, M. Heggen, H. Vereecken, and E. Klumpp, Transport and retention of multi-walled carbon nanotubes in saturated porous media: Effects of input concentration and grain size, Water Research, 47(2), 933-944, 2013.
10. Legros, S., E. Doelsch, F. Feder, G. Moussard, J. Sansoulet, J.-P. Gaudet, S. Rigaud, I. Basile Doelsch, H. Saint Macary, and J.-Y. Bottero, Fate and behaviour of Cu and Zn from pig slurry spreading in a tropical water–soil–plant system, Agriculture, Ecosystems & Environment, 164(1), 70-79, 2013.
11. Liang, Y. S. A. Bradford, J. Šimůnek, Vereecken11, and E. Klumpp, Sensitivity of the transport an retention of stabilized silver nanoparticles to physicochemical factors, Water Research, 47, 2572-2582, doi:10.1016/j.watres.2013.02.025, 2013.
12. Liu, X., S. Sun, P. Ji, and J. Šimůnek, Evaluation of historical nitrate sources in groundwater and impact of current irrigation practices on groundwater quality, Journal of Hydrological Sciences, 58(1), 1–15, DOI:10.1080/02626667.2012.745937, 2013.
13. Luo, L., D. J. Ashworth, J. Šimůnek, R. Xuan, and S. Yates, Assessment of various methods for methyl iodide emission reduction and pest control using simulation model, Atmospheric Environment, 66, 33-40, doi:10.1016/j.atmosenv.2012.03.080, 2013.
14. McCarter, C. P. R., and J, S. Price, Ecohydrology of Sphagnum moss hummocks: mechanisms of capitula water supply and simulated effects of evaporation, Ecohydrology, Article first published online : 26 SEP 2012, DOI: 10.1002/eco.1313, 2013.
15. Moghadas, D., K. Z. Jadoon, J. Vanderborght, S. Lambot, and H. Vereecken, Effects of near surface soil moisture profiles during evaporation on far-field ground-penetrating radar data: A numerical study, Vadose Zone Journal, 12(1), doi:10.2136/vzj2012.0138, 11 pp., 2013.
16. Mondal, P. K., and B. E. Sleep, Virus and virus-sized microsphere transport in a dolomite rock fracture, Water Resources Research, DOI: 10.1002/wrcr.20086, published online : 6 FEBmanuscript 2013.
17. Moradzadeh, M., H. Moazed, and G. Sayyad, Dynamic Sorption of Ammonium by a Sandy Loam Soil Treated with Zeolite and Evaluation of Convection-Dispersion and Mobile-Immobile Models, The Journal of Science and Technology of Agriculture and Natural Resources, Water and Soil Science, 16(62), 163-173, 2013 (in Farsi with an English abstract).
18. Skaggs, T. H., D. L. Suarez, and S. Goldberg, Effects of soil hydraulic and transport parameter uncertainty on predictions of solute transport in large lysimeters, Vadose Zone Journal , 12(1), doi:10.2136/vzj2012.0143, 12 pp., 2013.
19. Wu, Che-Chuan, and Steven A. Margulis Real-time soil moisture and salinity profile estimation using assimilation of embedded sensor datastreams, Vadose Zone Journal, 12(1), doi:10.2136/vzj2011.0176, 17 pp., 2013.
20. Xie, J., J. Lu, X. Zhou, X. Wang, M. Li, L. Du, Y. Liu, and G. Zhou, Plutonium-239 sorption and transport on/in unsaturated sediments: comparison of batch and column experiments for determining sorption coefficients, J. Radioanal. Nucl. Chem., DOI 10.1007/s10967-012-1960-2, published online, 2013.
21. Zhao, Y., T. Nishimura, R. Hill, and T. Miyazaki, Frozen soil by the multistep outflow method, Vadose Zone Journal, 12(1), doi:10.2136/vzj2012.0061, 10 pp., 2013.

2012

1. Acharya, S., J. W. Jawitz, and . S. Mylavarapu, Analytical expressions for drainable and fillable porosity of phreatic aquifers under vertical fluxes from evapotranspiration and recharge, Water Resources Research, 48, W11526, doi:10.1029/2012WR012043, 15 pp., 2012.
2. Akhavan, M., P. T. Imhoff, S. Finsterle, and A. S. Andres, Application of a coupled overland flow–vadose zone model to rapid infiltration basin systems, Vadose Zone Journal, 11(2), doi:10.2136/vzj2011.0140, 13 pp., 2012.
3. Al-Mashaqbeh, O., and R. G. McLaughlan, Non-equilibrium zinc uptake onto compost particles from synthetic stormwater, Bioresource Technology, 123, 242–248, 2012.
4. Anlauf, R., P. Rehrmann, and H. Schacht, Simulation of water uptake and redistribution in growing media during ebb-and-flow irrigation, Journal of Horticulture and Forestry, 4(1), 8-21, 2012.
5. Arora, B., B. P. Mohanty, and J. T. McGuire, Uncertainty in dual permeability model parameters for structured soils, Water Resour. Res., 48, W01524, 17 pp., doi:10.1029/2011WR010500, 2012.
6. Awan, U. K., B. Tischbein, P. Kamalov, C. Martius, and M. Hafeez, Modeling Irrigation Scheduling Under Shallow Groundwater Conditions as a Tool for an Integrated Management of Surface and Groundwater Resources, in: Cotton, Water, Salts and Soums, Eds. C. Martius, I. Rudenko, J. P. A. Lamers, and P. L. G. Vlek, 5, 309-327, 2012.
7. Bali, M., and M. Gueddari, Simulation of water flow and solute transport in intermittent sand filter, J. of Water Supply: Research and Technology: Aqua, 61(1), 50-57, DOI: 10.2166/aqua.2012.104, 2012.
8. Bea, S. A., S. A. Wilson, K. U. Mayer, G. M. Dipple, I. M. Power, and P. Gamazo, Reactive transport modeling of natural carbon sequestration in Ultramafic mine tailings, Vadose Zone Journal, 11(2), doi:10.2136/vzj2011.0053, 17 pp., 2012.
9. Cabral, O. M. R., H. R. Rocha, J. H. Gash, M. A. V. Ligo, J. D. Tatsch, H. C. Freitas, and E. Brasilio, Water use in a sugarcane plantation, Global Change Biology Bioenergy, 4(5), 555-565, DOI: 10.1111/j.1757-1707.2011.01155.x, 2012.
10. Chotpantarat, S., S. K. Ong, C. Sutthirat, and K. Osathaphan, Competitive modeling of sorption and transport of Pb2+, Ni2+, Mn2+ and Zn2+ under binary and multi-metal systems in lateritic soil columns, Geoderma, 189–190, 278–287, 2012.
11. Diamantopoulos, E., S. C. Iden, W. Durner, Inverse modeling of dynamic nonequilibrium in water flow with an effective approach, Water Resour. Res., 48(3), W03503, doi.10.1029/2011WR010717, pp. 16, 2012.
12. Du, G., Z. Li, L. Liao, R. Hanson, S. Leick, N. Hoeppner, and Wei-Teh Jiang, Cr(VI) retention and transport through Fe(III)-coated natural zeolite, Journal of Hazardous Materials, 221, 118-123, DOI: 10.1016/j.jhazmat.2012.04.016, 2012.
13. Ebrahimian H., A. Liaghat, M. Parsinejad, F. Abbasi, and M. Navabian, Comparison of one- and two dimensional models to simulate alternate and conventional furrow fertigation, Journal of Irrigation and Drainage Engineering, DOI: 10.1061/(ASCE)IR.1943-4774.0000482, in press, 2012.
14. Elmi, A., J. S. Abou Nohra, C. A. Madramootoo, and W. Hendershot, Estimating phosphorus leachability in reconstructed soil columns using HYDRUS-1D model, Environmental Earth Sciences, 65(6), 1751-1758, DOI 10.1007/s12665-011-1154-1, 2012.
15. Fan, J., S. B. Jones, L. B. Qi, Q. J. Wang, and M. B. Huang, Effects of precipitation pulses on water and carbon dioxide fluxes in two semiarid ecosystems: measurement and modeling, Environ. Earth Sci., doi 10.1007/s12665-012-1678-z, 10 pp., 2012.
16. Fer, M., and R. Kodešova, Estimating hydraulic conductivities of the soil aggregates and their clay-organic coatings using numerical inversion of capillary rise data, Journal of Hydrology, 468–469, 229–240, 2012.
17. Firouzi, A. F., M. Homaee, E. Klumpp, R. Kasteel, and M. Sattari, Modeling microbial contaminant transport and deposition in calcareous soils under saturated conditions, Journal of Science and Technology of Agriculture and Natural Resources, 15(58(B)), 53-68, 2012.
18. Franz, T. E., M. Zreda, T. P. A. Ferre, R. Rosolem, C. Zweck, S. Stillman, X. Zeng, and W. J. Shuttleworth, Measurement depth of the cosmic ray soil moisture probe affected by hydrogen from various sources, Water Resour. Res., 48, W08515, DOI: 10.1029/2012WR011871, 2012.
19. Godt, J. W., B. Sener-Kaya, N. Lu, and R. L. Baum, Stability of infinite slopes under transient partially saturated seepage conditions, Water Resources Research, 48, W05505, DOI: 10.1029/2011WR011408, 2012.
20. Gupta, M., N. K. Garg, H. Joshi, and M. P. Sharma, Persistence and mobility of 2,4-D in unsaturated soil zone under winter wheat crop in sub-tropical region of India, Agriculture, Ecosystems & Environment, 146(1), 60–72, 2012.
21. Hanna, K., L. Lassabatere, and B. Bechet, Transport of two naphthoic acids and salicylic acid in soil: Experimental study and empirical modeling, Water Research, 46(14), 4457-4467, DOI: 10.1016/j.watres.2012.04.037, 2012.
22. Jadoon, K. Z., L. Weihermuller, H. Verrecken, and S. Lambot, Estimation of soil hydraulic parameters by integrated hydrogeophysical inversion of time-lapse GPR data measured at Selhausen, Germany, 14th International Conference on Ground Penetrating Radar (GPR), Shanghai, China, 4-8 June 2012, pp. 701-6, 2012.
23. Jadoon, K. Z., L. Weihermüller, B. Scharnagl, M. B. Kowalsky, M. Bechtold, S. S. Hubbard, H. Vereecken, and S. Lambot , Estimation of soil hydraulic parameters in the field by integrated hydrogeophysical inversion of time-lapse ground-penetrating radar data, Vadose Zone Journal, 11(4), doi:10.2136/vzj2011.0177, pp. 17, 2012.
24. Jones, E. H., and C. Su, Fate and transport of elemental copper (Cu0) nanoparticles through saturated porous media in the presence of organic materials, Water Research, 46(7), 2445-2456, 2012.
25. Jones, S. B., D. Or, R. Heinse, and M. Tuller, Beyond Earth: Designing root zone environments for reduced gravity conditions, Vadose Zone Journal, 11(1), doi:10.2136/vzj2011.0081, 11 pp., 2012.
26. Kalbacher, T., and Yanliang Du, Richards Flow, in: Lecture Notes in Computational Science and Engineering, Volume 86, Thermo-Hydro-Mechanical-Chemical Processes in Porous Media, Eds. O. Kolditz, U.-J. Görke, H. Shao, and W. Wang, 125-142, 2012.
27. Kanzari, S., M. Hachicha, R. Bouhlila, and J. Battle-Sales, Characterization and modeling of water movement and salts transfer in a semi-arid region of Tunisia (Bou Hajla, Kairouan) - Salinization risk of soils and aquifers, Computers and Electronics in Agriculture, 86, 34-42, DOI: 10.1016/j.compag.2011.09.010, 2012.
28. Keim, D. M., L. J. West, and N. E. Odling, Convergent flow in unsaturated fractured chalk, Vadose Zone Journal, 11(4), doi:10.2136/vzj2011.0146, pp. 13, 2012.
29. Kodešová, R., M. Kočárek, T. Hajková, M. Hýbler, O. Drábek, and V. Kodeš, Chlorotoluron mobility in compost amended soil, Soil and Tillage Research, 118, 88-96, 2012.
30. Kuznetsov, M., A., Yakirevich, Y. A. Pachepsky, S. Sorek, and N. Weisbrod, Quasi 3D modeling of water flow in vadose zone and groundwater, Journal of Hydrology, 450-451, 140-149, 2012.
31. Leterme, B., D. Mallants, and D. Jacques, Sensitivit of groundwater recharge using climatic analogues and HYDRUS-1D, Hydrol. Earth Syst. Sci., 16, 2485–2497, doi:10.5194/hess-16-2485-2012, 2012.
32. Li, Y., W. Kinzelbach, J. Zhou, G. D. Cheng, and X. Li, Modelling irrigated maize with a combination of coupled-model simulation and uncertainty analysis, in the northwest of China, Hydrol. Earth Syst. Sci., 16, 1465–1480, 2012.
33. Major, J., M. Rondon, D. Molina, S. J. Riha, and J. Lehmann, Nutrient Leaching in a Colombian Savanna Oxisol Amended with Biochar, J. Environ. Quality, 41(4), 1076-1086, DOI: 10.2134/jeq2011.0128, 2012.
34. Mboh, C. M., J. A. Huisman, E. Zimmermann, and H. Vereecken, Coupled hydrogeophysical inversion of streaming potential signals for unsaturated soil hydraulic properties, Vadose Zone Journal, 11(2), doi:10.2136/vzj2011.0115, 14 pp., 2012.
35. Merdun, H., Effects of different factors on water flow and solute transport investigated by time domain reflectometry in sandy clay loam field soil, Water, Air, & Soil Pollution, 223(8), 4905-4923, 2012.
36. Merk, R., Numerical modeling of the radionuclide water pathway with HYDRUS and comparison with the IAEA model of SR 44, Journal of Environmental Radioactivity, 105, 60–69, 2012.
37. Moody, J. A., and B. A. Ebel, Difference infiltrometer: a method to measure temporally variable infiltration rates during rainstorms, Hydrological Processes, 26, 3312–3318, 2012.
38. Moricz, N., C. Matyas, I. Berki, E. Rasztovits, Z. Vekerdy, and Z. Gribovszki, Comparative water balance study of forest and fallow plots, IForest - Biogeosciences and Forestry, 5, 188-196, DOI: 10.3832/ifor0624-005, 2012.
39. Nosetto, M. D., E. G. Jobbagy, A. B. Brizuela, and R. B. Jackson, The hydrologic consequences of land cover change in central Argentina, Agriculture, Ecosystems & Environment, 2-11, DOI: 10.1016/j.agee.2011.01.008, 2012.
40. Kodešová, R., K. Němeček, V. Kodeš, and A. Žigová, Using dye tracer for visualization of preferential flow at macro- and microscales, Vadose Zone Journal, 11(1), 11 pp., doi:10.2136/vzj2011.0088, 2012.
41. Mboh, C. M., J. A. Huisman, E. Zimmermann, and H. Vereecken, Coupled hydrogeophysical inversion of streaming potential signals for unsaturated soil hydraulic properties, Vadose Zone Journal, 11(2), doi:10.2136/vzj2011.0115, 14 pp., 2012.
42. Oster, J. D., J. Letey, P. Vaughan, L. Wu, and M. Qadir, Comparison of transient state models that include salinity and matric stress effects on plant yield, Agricultural Water Management, 103, 167-175, 2012.
43. Ozturk, Z., B. Tansel, Y. Katsenovich, M. Sukop, and S. Laha, Highly organic natural media as permeable reactive barriers: TCE partitioning and anaerobic degradation profile in eucalyptus mulch and compost, Chemosphere, 89(6), 665-671, DOI: 10.1016/j.chemosphere.2012.06.006, 2012.
44. Palla, A., I. Gnecco, and L. G. Lanza, Compared performance of a conceptual and a mechanistic hydrologic models of a green roof, Hydrol. Process., 26, 73–84, DOI: 10.1002/hyp.8112, 2012.
45. Pan, A., A. Hou, F. Tian, G. Ni, and H. Hu, Hydrologically enhanced distributed urban drainage model and its application in Beijing city, Journal of Hydrologic Engineering, 17(6), 667-678, 2012.
46. Paradelo, M., P. Pérez-Rodríguez, D. Fernández-Calviño, M. Arias-Estévez and J. E. López-Periago, Coupled transport of humic acids and copper through saturated porous media, European Journal of Soil Science, 63, 708–716, 2012.
47. Raymundo-Raymundo, E., Yu. N. Nikolskii, A. K. Guber, and C. Landeros-Sanchez, Adequacy of transport parameters obtained in soil column experiments for selected chemicals, Eurasian Soil Science, 45(7), 675-683, DOI: 10.1134/S106422931207006X, 2012.
48. Robinson, D. A., H. Abdu, I. Lebron, and S. B. Jones, Imaging of hill-slope soil moisture wetting patterns in a semi-arid oak savanna catchment using time-lapse electromagnetic induction, Journal of Hydrology, 416, 39-49, DOI: 10.1016/j.jhydrol.2011.11.034, 2012.
49. Russell, T. L., K. M. Yamahara, and A. B. Boehm, Mobilization and Transport of Naturally Occurring Enterococci in Beach Sands Subject to Transient Infiltration of Seawater, Environmental Science & Technology, 46(11), 5988-5996, DOI: 10.1021/es300408z, 2012.
50. Sadeghi, M., and S. B. Jones, Scaled solutions to coupled soil-water flow and solute transport during the redistribution process, Vadose Zone Journal, 11(4), doi:10.2136/vzj2012.0023, pp. 10, 2012.
51. Safadoust, A., A. A. Mahboubi, M. R. Mosaddeghi, B. Gharabaghi, P. Voroney, A. Unc, and Gh. Khodakaramian, Significance of physical weathering of two-texturally different soils for the saturated transport of Escherichia coli and bromide, Journal of Environ. Management, 107, 147-158, DOI: 10.1016/j.jenvman.2012.04.007, 2012.
52. Safadoust, A., A. A. Mahboub, M. R. Mosaddeghi, B. Gharabaghi, A. Unc, P. Voroney, and A. Heydari, Effect of regenerated soil structure on unsaturated transport of Escherichia coli and bromide, Journal of Hydrology, 430–431(2), 80–90, 2012.
53. Safari, E., M. J. Ghazizade, and M. A. Abdoli, Mohammad, A performance-based method for calculating the design thickness of compacted clay liners exposed to high strength leachate under simulated landfill conditions, Waste Management & Research, 30(9), 898-907, DOI: 10.1177/0734242X12448520, 2012.
54. Sandor, R., and Fodor Nandor, Simulation of Soil Temperature Dynamics with Models Using Different Concepts, Scientific World Journal, 590287, DOI: 10.1100/2012/590287, 2012.
55. Saquing, J. M., D. R. U. Knappe, and M. A. Barlaz, Fate and transport of phenol in a packed bed reactor containing simulated solid waste, Waste Management, 32(2), 327-334, 2012.
56. Saso, J. K., G. W. Parkin, C. F. Drury, J. D. Lauzon, and W. D. Reynolds, Chloride leaching in two Ontario soils: Measurement and prediction using HYDRUS-1D, Canadian Journal of Soil Science, 92(2), 285-296, DOI: 10.4141/CJSS2011-046, 2012.
57. Schelle, H., S. C. Iden, J. Fank, and W. Durner, Inverse estimation of soil hydraulic and root distribution parameters from lysimeter data, Vadose Zone Journal, 11(4), doi:10.2136/vzj2011.0169, pp. 15, 2012.
58. Schneider, S., D. Mallants, and D. Jacques, Determining hydraulic properties of concrete and mortar by inverse modelling, Mater. Res. Soc. Symp. Proc. Vol. 1475, DOI: 10.1557/opl.2012.601, Cambridge University Press, 367-372, 2012.
59. Scholer, M., J. Irving, M. C. Looms, L. Nielsen, and K. Holliger, Bayesian Markov-chain-Monte-Carlo inversion of time-lapse crosshole GPR data to characterize the vadose zone at the Arrenaes site, Denmark, Vadose Zone Journal, 11(4), doi:10.2136/vzj2011.0153, pp. 19, 2012.
60. Schröder, N., M. Javaux, J. Vanderborght, B. Steffen, and H. Vereecken, Effect of root water and solute uptake on apparent soil dispersivity: A simulation study, Vadose Zone Journal, 11(3), doi:10.2136/vzj2012.0009, 14 pp., 2012.
61. Sela, S., T. Svoray, and S. Assouline, Soil water content variability at the hillslope scale: Impact of surface sealing, Water Resour. Res., 48(3), W03522, doi:10.1029/2011WR011297, 2012.
62. Séré, G., S. Ouvrard, V. Magnenet, B. Pey, J. L. Morel, and C. Schwartz, Predictability of the evolution of the soil structure using water flow modeling for a constructed technosol, Vadose Zone Journal, 11(1), doi:10.2136/vzj2011.0069, 2012.
63. Šimůnek, J., M. Th. van Genuchten, and M. Šejna, HYDRUS: Model use, calibration and validation, Special issue on Standard/Engineering Procedures for Model Calibration and Validation, Transactions of the ASABE, 55(4), 1261-1274, 2012.
64. Singh, J., R. Mohtar, E. Braudeau, G. Heathmen, J. Jesiek, and D. Singh, Field evaluation of the pedostructure-based model (Kamel (R)), Computers and Electronics in Agriculture,86, 4-14, DOI: 10.1016/j.compag.2012.03.001, 2012.
65. Steelman, C. M., A. L. Endres, and J. P. Jones, High-resolution ground-penetrating radar monitoring of soil moisture dynamics: Field results, interpretation, and comparison with unsaturated flow model, Water Resources Research, 48, W09538, doi:10.1029/2011WR011414, 2012.
66. Stumpp, C., W. Stichler, M. Kandolf, and J. Šimůnek, Effects of land cover and fertilization method on water flow and solute transport in five lysimeters: A long-term study using stable water isotopes, Vadose Zone Journal, 11(1), doi:10.2136/vzj2011.0075, 14 pp., 2012.
67. Sutanto, S. J., J. Wenninger, A. M. J. Coenders-Gerrits, and S. Uhlenbrook, Partitioning of evaporation into transpiration, soil evaporation and interception: a comparison between isotope measurements and a HYDRUS-1D model, Hydrol. Earth Syst. Sci., 16(8), 2605–2616, 2012.
68. Tafteh, A., and A. R. Sepaskhah, Application of HYDRUS-1D model for simulating water and nitrate leaching from continuous and alternate furrow irrigated rapeseed and maize fields, Agricultural Water Management, 113, 19-29, DOI: 10.1016/j.agwat.2012.06.011, 2012.
69. Tian, Y., B. Gao, Y. Wang, V. L. Morales, R. M. Carpena, Q. Huang, and L. Yang, Deposition and transport of functionalized carbon nanotubes in water-saturated sand columns, Journal of Hazardous Materials, 213, 265-272, DOI: 10.1016/j.jhazmat.2012.01.088, 2012.
70. Van Meir, N., J. P. Gaudet, V. Phrommavanh, J. P. Laurent, D. Bugai, and R. Biron, Flow in the unsaturated zone around a shallow subsurface radioactive waste trench: Interpretation of an infiltration–drainage test at the Chernobyl Pilot Site, Applied Geochemistry, 27(7), 1297–1303, 2012.
71. Vandoorne, B., L. Beff, S. Lutts, and M. Javaux, Root water uptake dynamics of Cichorium intybus var. sativum under water-limited conditions, Vadose Zone Journal, 11(3), doi:10.2136/vzj2012.0005, 16 pp., 2012.
72. Vithanage, M., P. Engesgaard, K. G. Villholth, and K. H. Jensen, The Effects of the 2004 Tsunami on a Coastal Aquifer in Sri Lanka, Ground Water, 50(5), 704–714, 2012.
73. Wang, D., S. A. Bradford, M. Paradelo, W. J. G. M. Peijnenburg, and D. Zhou, Facilitated transport of Copper with hydroxyapatite nanoparticles in saturated sand, Soil Sci. Soc. Am. J., 76, 375-388, 2012.
74. Wayllace, A., and N. Lu, A transient water release and imbibitions method for rapidly measuring wetting and drying soil water retention and hydraulic conductivity functions, Geotechnical Testing Journal, 35(1), 1-15, 2012.
75. Wehrer, M., P. Jaesche, and K. U. Totsche, Modeling the kinetics of microbial degradation of deicing chemicals in porous media under flow conditions, Environmental Pollution, 168, 96-106 DOI: 10.1016/j.envpol.2012.04.016, 2012.
76. Wilcox, B. P. L. Turnbull, M. H. Young, C. J. Williams, S. Ravi, M. S. Seyfried, D. R. Bowling, R. L. Scott, M. J. Germino, T. G. Caldwell, and J. Wainwright, Invasion of shrublands by exotic grasses: ecohydrological consequences in cold versus warm deserts, Ecohydrology, 5(2), 160-173, DOI: 10.1002/eco.247, 2012.
77. Xiang, L., Z. Yu, L. Chen, J. Mon, and H. Lü, Evaluating Coupled Water, Vapor, and Heat Flows and Their Influence on Moisture Dynamics in Arid Regions, Journal of Hydrologic Engineering, 17(4), 565-577, DOI: 10.1061/(ASCE)HE.1943-5584.0000474, 2012.
78. Zhang, Q., S. M. Hassanizadeh, A. Raoof, M. Th. van Genuchten, and S. M. Roels, Modeling virus transport and remobilization during transient partially saturated flow, Vadose Zone J., 2, doi:10.2136/vzj2011.0090, 11 pp., 2012.
79. Zhao, W., Y.K. Li, C. F. Zhou, Y. Z. Liu, J. Du, P. L. Yang, K. Q. Zhang, F. Wang, and Z. P. Huang, HYDRUS-CLIMGEN Coupling Model and Its Applications in Analyzing Nitrogen Leaching Under Long-Term Piggery Wastewater Irrigation, Sensor Letters, 10(1-2), 649-659, DOI: 10.1166/sl.2012.1884, 2012.
80. Zhou, J., G. Cheng, X. Li, B. X. Hu, and G. Wang, Numerical Modeling of Wheat Irrigation using Coupled HYDRUS and WOFOST Models, Soil Sci. Soc. Amer. J., 76(2), 648-662, DOI: 10.2136/sssaj2010.0467, 2012.

2011

1. Abichou, T., K. Mahieu, J. Chanton, M. Romdhane, and I. Mansouri, Scaling methane oxidation: From laboratory incubation experiments to landfill cover field conditions, Waste Management , 31(5), 978-986, 2011.
2. Alavi, G., M. Chung, J. Lichwa, M. D’Alessio, and Ch. Ray, The fate and transport of RDX, HMX, TNT and DNT in the volcanic soils of Hawaii: A laboratory and modeling study, Journal of Hazardous Materials, 185, 1600–1604, 2011.
3. Allen, R. G., Skin layer evaporation to account for small precipitation events - An enhancement to the FAO-56 evaporation model, Agricultural Water Management, 99, 8– 18, 2011.
4. Ali, M. H., Pollution of water resources from agricultural fields and its control, Practices of Irrigation & On-farm Water Management: Volume 2, 241-269, Springer, ISBN 978-1-4419-7636-9, 2011.
5. Arora, B., B. P. Mohanty, and J. T. McGuire, Inverse estimation of parameters for multidomain flow models in soil columns with different macropore densities, Water Resour. Res., 47, W04512, doi:10.1029/2010WR009451, 2011.
6. Assouline, S., and K. Narkis, Effects of long‐term irrigation with treated wastewater on the hydraulic properties of a clayey soil, Water Resour. Res., 47, W08530, doi:10.1029/2011WR010498, 2011.
7. Bergvall, M., H. Grip, J. Sjöström, and H. Laudon, Modeling subsurface transport in extensive glaciofluvial and littoral sediments to remediate a municipal drinking water aquifer, Hydrol. Earth Syst. Sci., 15, 2229–2244, 2011.
8. Bradford, S. A., S. Torkzaban, and J. Šimůnek, Modeling colloid transport and retention in saturated porous media under unfavorable attachment conditions, Water Resour. Res., 47, W10503, doi:10.1029/2011WR010812, 2011.
9. Breede, K., A. Kemna, O. Esser, E. Zimmermann, H. Vereecken, and J.A. Huisman, Joint measurement setup for determining spectral induced polarization and soil hydraulic properties, Vadose Zone Journal, 10(2), 716-726, 2011.
10. Cannavo, P., J. Sansoulet, J.-M. Harmand, P. Siles, E. Dreyer, and P. Vaast, Agroforestry associating coffee and Inga densiflora results in complementarity for water uptake and decreases deep drainage in Costa Rica, Agriculture, Ecosystems and Environment, 140, 1–13, 2011.
11. Celestino Ladu, J. L., and D.-R. Zhang, Modeling atrazine transport in soil columns with, Water Science and Engineering, 4(3), 258-269, doi:10.3882/j.issn.1674-2370.2011.03.003, 2011.
12. Chotpantarat, S., S. K. Ong, C. Sutthirat, and K. Osathaphan, Effect of pH on transport of Pb2+, Mn2+, Zn2+ and Ni2+ through lateritic soil: Column experiments and transport modeling, Journal of Environmental Sciences, 23(4), 640-648, 2011.
13. Deb, S. K., M. K. Shukla, and J. G. Mexal, Numerical modeling of water fluxes in the root zone of a mature pecan orchard, Soil Science Society of America Journal, 75(5), 1667-1680, 2011.
14. Deb, S. K., M. K. Shukla, P. Sharma, and J. G. Mexal, Coupled liquid water, water vapor, and heat transport simulations in an unsaturated zone of a sandy loam field, Soil Science 176(8), 387-398, 2011.
15. Desmet, N. J. S., S. Van Belleghem, P. Seuntjens, T. J. Bouma, K. Buis, and P. Meire, Quantification of the impact of macrophytes on oxygen dynamics and nitrogen retention in a vegetated lowland river, Physics and Chemistry of the Earth, 36, 479–489, 2011.
16. Durner, W., and S. C. Iden, Extended multistep outflow method for the accurate determination of soil hydraulic properties near water saturation, Water Resour. Res., 47, W08526, doi:10.1029/2011WR010632, 2011.
17. Galleguillos, M., F. Jacob, L. Prevot, A. French, and P. Lagacherie, Comparison of two temperature differencing methods to estimate daily evapotranspiration over a Mediterranean vineyard watershed from ASTER data, Remote Sensing of Environment, 115(6), 1326-1340, 2011.
18. Garcia, C.A., B. J. Andraski, D. A. Stonestrom, C. A. Cooper, J. Šimůnek, and S. W. Wheatcraft, Interacting vegetative and thermal contributions to water movement in desert soil, Vadose Zone Journal, 10(2), 552-564, 2011.
19. Gates, J. B., B. R. Scanlon, X. Mu, and L. Zhang, Impacts of soil conservation on groundwater recharge in the semi-arid Loess Plateau, China, Hydrogeology Journal, 19, 865–875, 2011.
20. Gebrenegus, T., and T. A. Ghezzehei, An index for degree of hysteresis in water retention, Soil Science Society of America Journal, 75(6), 2122-2127, 2011.
21. Githinji, L. J. M., J. H. Dane, and R. H. Walker, Physical and hydraulic properties of inorganic amendments and modeling their effects on water movement in sand-based root zones, Irrigation Science, 29(1), 65-77, 2011.
22. Grinevskii, S. O. Modeling root water uptake when calculating unsaturated flow in the vadose zone and groundwater recharge, Moscow University Geology Bulletin, 66(3), 189-201, 2011.
23. Grinevskii, S. O., and M. V. Novoselova, Regularities in the formation of groundwater infiltration recharge, Water Resources, 38(2), 175-186, 2011.
24. Grünberger, O., J. L. Michelot, L. Bouchaou, P. Macaigne, Y. Hsissou, and C. Hammecker, Capillary rise quantifications based on in-situ artificial deuterium peak displacement and laboratory soil characterization, Hydrol. Earth Syst. Sci., 15, 1629–1639, 2011.
25. Haarder, E. B., M. C. Looms, K. H. Jensen, and L. Nielsen, Visualizing unsaturated flow phenomena using high-resolution reflection ground penetrating radar, Vadose Zone Journal, 10(1), 84-97, 2011.
26. Hammou, H., I. Ginzburg, and M. Boulerhcha, Two-relaxation-times Lattice Boltzmann schemes for solute transport in unsaturated water flow, with a focus on stability, Advances in Water Resources, 34, 779-793, 2011.
27. Han, B., V. Scicchitano, and P. T. Imhoff, Measuring fluid flow properties of waste and assessing alternative conceptual models of pore structure, Waste Management, 31, 445–456, 2011.
28. Hansen, D. J., J. T. McGuire, and B. P. Mohanty, Enhanced biogeochemical cycling and subsequent reduction of hydraulic conductivity associated with soil-layer interfaces in the vadose zone, J. Environ. Quality, 40(6), 1943-1954, 2011.
29. Harman, C. J., P. S. C. Rao, N. B. Basu, G. S. McGrath, P. Kumar, and M. Sivapalan, Climate, soil, and vegetation controls on the temporal variability of vadose zone transport, Water Resour. Res., 47, W00J13, doi:10.1029/2010WR010194, 2011.
30. Huang, M., S. L. Barbour, A. Eishorbagy, J. D. Zettl, and B. Cheng Si, Infiltration and drainage processes in multi-layered coarse soils, Can. J. Soil Sci., 91, 169-183 doi:1O.4141jCJSS09118, 2011.
31. Huo, L., G. Yang, T. Qian, and Yong Chen, Transport of Sr through Saturated Loess Soil, Communications in Computer and Information Science, 158(4), 242-247, DOI: 10.1007/978-3-642-22694-6_34, 2011.
32. Iversen, B. V., C. D. Børgesen, M. Lægdsmand, M. H. Greve, G. Heckrath, and C. Kjærgaard, Risk Predicting of Macropore Flow using Pedotransfer Functions, Textural Maps, and Modeling, Vadose Zone Journal, 10(4), 1185-1195, 2011.
33. Kalin, J., B. Petkovsek, Ph. Montarnal, A. Genty, E. Deville, J. Krivic, and J. Ratej, Comparison of two numerical modelling codes for hydraulic and transport calculations in the near-field, Nuclear Engineering and Design, 241(4), International Conference on Nuclear Energy for New Europe 2009, 1225-1232, 2011.
34. Kargas, G., and P. Kerkides, A contribution to the study of the phenomenon of horizontal infiltration, Water Resour. Manag., 25, 1131–1141, 2011.
35. Kato, Ch., T. Nishimura, H. Imoto, and T. Miyazaki, Predicting soil moisture and temperature of Andisols under a monsoon climate in Japan, Vadose Zone Journal, 10(2), 541-551, 2011.
36. Kidmose, J., P. Engesgaard, B. Nilsson, T. Laier, and M. C. Looms, Spatial distribution of seepage at a flow-through lake: Lake Hampen, Western Denmark, Vadose Zone Journal, 10(1), 110-124, 2011.
37. Kodešová, R., V. Jirku, V. Kodes, M. Muehlhanselova, A. Nikodem, and Anna Zigova, Soil structure and soil hydraulic properties of Haplic Luvisol used as arable land and grassland, Soil & Tillage Research, 111 , 154–161, 2011.
38. Kodešová, R., A. Kapička, J. Lebeda, H. Grison, M. Kočárek, and E. Petrovský, Numerical simulation of fly-ash transport in three sands of different particle-size distribution using HYDRUS-1D, Journal of Hydrology and Hydromechanics, 59(3), 206- 216.
39. Krug, C. T., and Z. Kabala, Vadose zone transport of nitrate in the Sierra Pelona groundwater basin, Agua Dulce, California, World Environmental and Water Resources Congress 2011, Palm Springs, Ca, May 22-26 2011, ASCE, 1814-1823, 2011.
40. Kurtzman, D., and B. R. Scanlon, Groundwater recharge through Vertisols: Irrigated cropland vs. natural land, Israel, Vadose Zone Journal, 10(2), 662-674, 2011.
41. Leij, F. J., A. Sciortino, J. H. Dane, and M. Naylor, Hydraulic properties of soils subjected to aqueous solutions with diesel or ethanol-blended diesel, Geoderma, 162, 288-295, 2011.
42. Leterme, B., and D. Mallants, Climate and land use change impacts on groundwater recharge, Proceedings ModelCARE2011, Models - Repositories of Knowledge, IAHS Publ., Leipzig, Germany, September 18-22, pp. 7 , 2011.
43. Li, Chao, and Li Ren, Estimation of Unsaturated Soil Hydraulic Parameters Using the Ensemble Kalman Filter, Vadose Zone Journal, 10(4), 1205-1227, 2011.
44. Li, S., D. Zhou, Z. Luan, Y. Pan, C. Jiao, Quantitative simulation on soil moisture contents of two typical vegetation communities in Sanjiang Plain, China, Chinese Geographical Science, 21(6), 723-733, 2011.
45. Lu, X., M. Jin, M. Th. van Genuchten, and B. Wang, Ground water recharge at five representative sites in the Hebei Plain of China: Case study. Ground Water 49(2): 286-294, 2011.
46. Lutterodt, G., J. W. A. Foppen, A. Maksoud, and S. Uhlenbrook, Transport of Escherichia coli in 25 m quartz sand columns, Journal of Contaminant Hydrology, 119(1-4), 80–88, 2011.
47. Magal, M., N. Weisbrod, Y. Yechieli, S. L. Walker, A. Yakirevich, Colloid transport in porous media: Impact of hyper-saline solutions, Water Research, 45, 3521-3532, 2011. Maraqa, M. A., X. Zhao, J.-u Lee, F. Allan, and T. C. Voice, Comparison of nonideal sorption formulations in modeling the transport of phthalate esters through packed soil columns, Journal of Contaminant Hydrology, 125, 57–69, 2011.
48. Mastrocicco, M., N. Colombani, G. Castaldelli, and N. Jovanovic, Monitoring and modeling nitrate persistence in a shallow aquifer, Water Air Soil Pollut., 217, 83–93, 2011.
49. Matisoff, G., M. E. Ketterer, K. Rosen, J. W. Mietelski, L. F. Vitko, H. Persson, and E. Lokas, Downward migration of Chernobyl-derived radionuclides in soils in Poland and Sweden, Applied Geochemistry, 26, 105–115, 2011.
50. Mboh, C. M., J. A. Huisman, and H. Vereecken, Feasibility of sequential and coupled inversion of time domain reflectometry data to infer soil hydraulic parameters under falling head infiltration, Soil Science Society of America Journal, 75(3), 775-786, 2011.
51. Meyer, W. J., S. Ahmad, M. H. Young, D. S. Shafer, J. J. Miller, and K. Chief, Effect of spatial and temporal variability of antecedent moisture content on model-generated runoff from an arid watershed, World Environmental and Water Resources Congress 2011, Palm Springs, Ca, May 22-26 2011, ASCE, 1137-1146, 2011.
52. Montzka, C., H. Moradkhani, L. Weihermuller, H.-J. H. Franssen, M. Canty, and H. Vereecken, Hydraulic parameter estimation by remotely-sensed top soil moisture observations with the particle filter, Journal of Hydrology, 399(3-4), 410-421, 2011.
53. Nasta, P., S. Huynh, and J. W. Hopmans, Simplified multistep outflow method to estimate unsaturated hydraulic functions for coarse-textured soils, Soil Science Society of America Journal, 75(2), 418-425, 2011.
54. Neumann, L. E., J. Šimůnek, and F. J. Cook, Implementation of quadratic upstream interpolation schemes for solute transport into HYDRUS-1D, Environmental Modelling & Software, 26(11), 1298-1308, 2011.
55. Oster, J. D., J. Letey, P. Vaughan, L. Wu, and M. Qadir, Comparison of transient state models that include salinity and matric stress effects on plant yield, Agricultural Water Management, 103, 167-175, 2011.
56. Pan, F., Y. A. Pachepsky, A. K. Guber, and R. L. Hill, Information and complexity measures applied to observed and simulated soil moisture time series, Hydrological Sciences Journal, 56(6), 1027-1039, 2011.
57. Palmsten, M. L., and R. A. Holman (2011), Infiltration and instability in dune erosion, J. Geophys. Res., 116, C10030, doi:10.1029/2011JC007083, 2011.
58. Paradelo, M., A. Letzner, M. Arias-Estévez, B. Garrido-Rodríguez, and J. E. López-Periago, Influence of soluble copper on the electrokinetic properties and transport of copper oxychloride-based fungicide particles, Journal of Contaminant Hydrology, 126, 37–44, 2011.
59. Patil, M. D., B. S. Das, and P. B. S. Bhadoria, A simple bund plugging technique for improving water productivity in wetland rice Soil & Tillage Research, 112 , 66–75, 2011.
60. Ramos, T. B., J. Šimůnek, M. C. Gonçalves, J. C. Martins, A. Prazeres, N. L. Castanheira, and L. S. Pereira, Field evaluation of a multicomponent solute transport model in soils irrigated with saline waters, J. of Hydrology, 407(1-4), 129-144, 2011.
61. Rimon, Y., R. Nativ, and O. Dahan, Physical and chemical evidence for pore-scale dual-domain flow in the vadose zone, Vadose Zone Journal, 10(1), 322-331, 2011.
62. Sakai, M., S. B. Jones, and M. Tuller, Numerical evaluation of subsurface soil water evaporation derived from sensible heat balance, Wat. Resour. Res., 47, W02547, doi:10.1029/2010WR009866, 2011.
63. Samouëlian, A., I. Cousin, C. Dagès, A. Frison, and G. Richard, Determining the effective hydraulic properties of a highly heterogeneous soil horizon, Vadose Zone Journal, 10(1), 450-458, 2011.
64. Scharnagl, B., J. A. Vrugt, H. Vereecken, and M. Herbst, Inverse modelling of in situ soil water dynamics: investigating the effect of different prior distributions of the soil hydraulic parameters, Hydrol. Earth Syst. Sci., 15, 3043–3059, 2011.
65. Sciortino, A., and F. J. Leij, Experimental and numerical investigation of the effect of diesel or ethanol-blended diesel on hydraulic properties of unsaturated soils, World Environmental and Water Resources Congress 2011, Palm Springs, Ca, May 22-26 2011, ASCE, 1127-1136, 2011.
66. Sciortino, S., F. Canora, and K. Martin, Effect of ethanol on water flow in the vadose zone, World Environmental and Water Resources Congress 2011, Palm Springs, Ca, May 22-26 2011, ASCE, 1162-1171, 2011.
67. Schelle, H., S. C. Iden, and W. Durner, Combined transient method for determining soil hydraulic properties in a wide pressure head range, Soil Science Society of America Journal, 75(5), 1681-1693, 2011.
68. Selle, B., B. Minasny, M. Bethune, T. Thayalakumaran, and S. Chandra, Applicability of Richards' equation models to predict deep percolation under surface irrigation, Geoderma, 160, 569–578, 2011.
69. Shouse, P. J., J. E. Ayars, and J. Šimůnek, Simulating root water uptake from a shallow saline groundwater resource, Agricultural Water Management, 98(5), 784-790, 2011.
70. Singh, P. N. , J. P. Mitchell, and W. W. Wallender, Parameter optimization for predicting soil water movement under crop residue cover, Transactions of the ASABE, 54(6), 2029-2035, 2011.
71. Singh, P. N., and W. W. Wallender, Effects of soil water salinity on field soil hydraulic functions, J. Irrig. Drain. Eng., 137(5): 295-303, 2011.
72. Smagin, A. V., Koltsov, I. N., Pepelov, I. L., Kirichenko, A. V., Sadovnikova, N. B., and R. R. Kinzhaev, The physical state of finely dispersed soil-like systems with drilling sludge as an example, Eurasian Soil Science, 44(2), 163–172, 2011
73. Smith, J. E., E. J. Henry, and R. Bashir, Solute-dependent capillarity-induced focused flow during infiltration into alcohol-contaminated soil, Vadose Zone Journal, 10(1), 403-411, 2011.
74. Soylu, M. E., E. Istanbulluoglu, J. D. Lenters, and T. Wang, Quantifying the impact of groundwater depth on evapotranspiration in a semi-arid grassland region, Hydrol. Earth Syst. Sci., 15, 787–806, 2011.
75. Strauss, C., T. Harter, and M. Radke, Effects of pH and manure on transport of sulfonamide antibiotics in soil, J. Environ. Qual., 40,1652–1660, 2011.
76. Terribile, F., A. Coppola, G. Langella, M. Martina, and A. Basile, Potential and limitations of using soil mapping information to understand landscape hydrology, Hydrol. Earth Syst. Sci., 15, 3895–3933, 2011.
77. Tinet, A.-J., L. Oxarango, R. Bayard, H. Benbelkacem, G. Stoltz, M. J. Staub, and J.-P. Gourc, Experimental and theoretical assessment of the multi-domain flow behaviour in a waste body during leachate infiltration, Waste Management, 31, 1797-1806, 2011.
78. Troygot, O., I. S. Saguy, and R. Wallach, Modeling rehydration of porous food materials: I. Determination of characteristic curve from water sorption isotherms, Journal of Food Engineering, 105(3), 408-415, 2011.
79. Wallach, R., O. Troygot, and I. S. Saguy, Modeling rehydration of porous food materials: II. The dual porosity approach, Journal of Food Engineering, 105(3), 416-421, 2011.
80. Wang, D., M. Paradelo, S. A. Bradford, W. J. G. M. Peijnenburg, L. Chu, and D. Zhou, Facilitated transport of Cu with hydroxyapatite nanoparticles in saturated sand: Effects of solution ionic strength and composition, Water Research, 45, 5909-5915, 2011.
81. Wang, W. (Wenke), Guizhang Zhao, Junting Li, Lili Hou, Yunliang Li, and Feng Yang, Experimental and numerical study of coupled flow and heat transport, Proceedings of the Institution of Civil Engineers - Water Management, 164(10), 533-547, DOI: 10.1680/wama.10.00088, 2011.
82. Weihermüller, L., R. Kasteel, J. Vanderborght, J. Šimůnek, and H. Vereecken, Uncertainty in pesticide monitoring using suction cups: Evidence from numerical simulations, Vadose Zone Journal, 10(4), 1287-1298, 2011.
83. Wöhling, T. , and J. A. Vrugt, Multiresponse multilayer vadose zone model calibration using Markov chain Monte Carlo simulation and field water retention data, Water Resour. Res., 47, W04510, doi:10.1029/2010WR009265, 2011.
84. Wu, C.-C., and S. A. Margulis, Feasibility of real-time soil state and flux characterization for wastewater reuse using an embedded sensor network data assimilation approach, Journal of Hydrology, 399(3-4), 313-325, 2011.
85. Xie, Tao, Xinhui Liu, and Tao Sun, The effects of groundwater table and flood irrigation strategies on soil water and salt dynamics and reed water use in the Yellow River Delta, China, Ecological Modelling, 222, 241–252, 2011.
86. Yuan, F., T. Meixner, M. E. Fenn, and J. Šimůnek, Impact of transient soil water simulation on estimated nitrogen leaching and emission at high- and low-deposition forest sites in Southern California, Journal of Geophysical Research, 116, G03040, doi:10.1029/2011JG001644, 15 pp., 2011.
87. Zeng, Y., Z. Su, L. Wan, and J. Wen, A simulation analysis of the advective effect on evaporation using a two-phase heat and mass flow model, Water Resour. Res., 47, W10529, doi:10.1029/2011WR010701, 2011.
88. Zeng, Y., Z. Su, L. Wan, and J. Wen, Numerical analysis of air‐water‐heat flow in unsaturated soil: Is it necessary to consider airflow in land surface models?, J. Geophys. Res., 116, D20107, doi:10.1029/2011JD015835, 2011.
89. Zhang, J., H. Gong, M. A ROSS, X. Li, and D. Zhou, Numerical modeling of shallow water table behavior with lisse effect, Chin. Geogra. Sci., 21(2), 249–256, 2011.

2010

1. Adomako, D., P. Maloszewski, C. Stumpp, S. Osae, and T. T. Akiti, Estimating groundwater recharge from water isotope (δ2H, δ18O) depth profiles in the Densu River basin, Ghana, Hydrological Sciences Journal, 55(8), 1405-1416, 2010.
2. An, H., Y. Ichikawa, Y. Tachikawa, and M. Shiiba, Three‐dimensional finite difference saturated‐unsaturated flow modeling with nonorthogonal grids using a coordinate transformation method, Water Resour. Res., 46, W11521, doi:10.1029/2009WR009024, 2010.
3. Assouline, S., K. Narkis, S. W. Tyler, I. Lunati, M. B. Parlange, and J. S. Selker, On the Diurnal Soil Water Content Dynamics during Evaporation using Dielectric Methods, Vadose Zone Journal, 9(3), 709-718, 2010.
4. Baum, R. L., J. W. Godt, and W. Z Savage, Estimating the timing and location of shallow rainfall-induced landslides using a model for transient, unsaturated infiltration, J. Geophysical Research, 115, F03013, doi:1029/2009JF001321, 2010.
5. Bautista, E., D. Zerihun, A. J. Clemmens, and T. S. Strelkoff, External iterative coupling strategy for surface-subsurface flow calculations in surface irrigation, Journal of Irrigation and Drainage Engineering, 136(10), 692-703, 2010.
6. Benson, C. H., Prediction in geoenvironmental engineering: Recommendations for reliable predictive modeling, in Advances in Analysis, Modeling, & Design, Proceedings of the GeoFlorida 2010 Conference, Eds. . Fratta, A. J. Puppala, and B. Muhunthan, ASCE, February 20-24, 2010, pp. 13, 2010.
7. Bolado-Rodríguez, S. D. García-Sinovas, and J. Álvarez-Benedí, Application of pig slurry to soils. Effect of air stripping treatment on nitrogen and TOC leaching, Journal of Environmental Management, 91, 2594-2598, 2010.
8. Brueck, H., K. Erdle, Y. Gao, M. Giese, Y. Zhao, S. Peth, and S. Lin, Effects of N and water supply on water use-efficiency of a semiarid grassland in Inner Mongolia, Plant Soil, 328, 495–505, 2010.
9. Cheyns, K., J. Mertens, J. Diels, E. Smolders, and D. Springael, Monod kinetics rather than a first-order degradation model explains atrazine fate in soil mini-columns: Implications for pesticide fate modeling, Environmental Pollution, 158(5), 1405-1411, 2010.
10. Creutzfeldt, B., A. Güuntner, S. Vorogushyn, and B. Merz, The benefits of gravimeter observations for modelling water storage changes at the field scale, Hydrol. Earth Syst. Sci., 14, 1715–1730, 2010.
11. De Wilde, T., P. Spanoghe, K. Sniegowksi, J. Ryckeboer, P. Jaeken, and D. Springael, Transport and degradation of metalaxyl and isoproturon in biopurification columns inoculated with pesticide-primed material, Chemosphere, 78(1), 56-60, 2010.
12. De Wilde, T., P. Spanoghe, J. Ryckeboer, P. Jaeken, and D. Springael, Transport and degradation of pesticides in a biopurification system under variable flux, part I: A microcosm study, Environmental Pollution, 158(10), 3309 - 3316, 2010.
13. De Wilde, T., P. Spanoghe, J. Ryckeboer, P. Jaeken, and D. Springael, Transport and degradation of pesticides in a biopurification system under variable flux, part II: A macrocosm study, Environmental Pollution, 158(10), 3317 - 3322, 2010.
14. Dann, R., V. Bidwell, S. Thomas, T. Wöhling, and M. Close, Modeling of Nonequilibrium Bromide Transport through Alluvial Gravel Vadose Zones, Vadose Zone Journal, 9, 731-746, 2010.
15. Ficklin, D. L., E. Luedeling, and M. Zhang, Sensitivity of groundwater recharge under irrigated agriculture to changes in climate, CO2 concentrations and canopy structure, Agricultural Water Management, 97(7), 1039-1050, 2010.
16. Grinevsky S. O., and S. P. Pozdnyakov, Principles regional evaluation of groundwater infiltration recharge basis on geohydrological model, Water Resources, 37(5), 638-652, 2010.
17. Hanna, K., B. Rusch, L. Lassabatere, A. Hofmann, and B. Humbert, Title: Reactive transport of gentisic acid in a hematite-coated sand column: Experimental study and modeling, Geochimica et Cosmochimica Acta, 74(12), 3351-3366, 2010.
18. Hinnell, A. C., T. P. A. Ferré, J. A. Vrugt, J. A. Huisman, S. Moysey, J. Rings, and M. B. Kowalsky, Improved extraction of hydrologic information from geophysical data through coupled hydrogeophysical inversion,Water Resour. Res., 46, W00D40, doi:10.1029/2008WR007060, 2010.
19. Huisman, J. A., J. Rings, J. A. Vrugt, J. Sorg, and H. Vereecken, Hydraulic properties of a model dike from coupled Bayesian and multi-criteria hydrogeophysical inversion, Journal of Hydrology, 380(1-2), 62-73, 2010.
20. Jellali, S., E. Diamantopoulos, H. Kallali, S. Bennaceur, M. Anane, and N. Jedidi, Dynamic sorption of ammonium by sandy soil in fixed bed columns: Evaluation of equilibrium and non-equilibrium transport processes, J. Environ. Management, 91(4), 897-905, 2010.
21. Jiang, S., L. Pang, G. D. Buchan, J. Šimůnek, M. J. Noonan, and M. E. Close, Modeling water flow and bacterial transport in undisturbed lysimeters under irrigations of dairy shed effluent and water using HYDRUS-1D, Water Research, special issue, doi:10.1016/j.watres.2009.08.039, 44, 1050-1061, 2010.
22. Köhler, M., L. Schwendenmann, and D. Hölscher, Throughfall reduction in a cacao agroforest: tree water use and soil water budgeting, Agricultural and Forest Meteorology, 150( 7-8), 1079-1089, 2010.
23. Laclau, J.-P., J. Ranger, J. L. de Moraes Gonçalves, V. Maquère, A. V. Krusche, A. Thongo M’Bou, Y. Nouvellon, L. Saint-André, J.-P. Bouillet, M. de Cassia Piccolo, and P. Deleporte, Biogeochemical cycles of nutrients in tropical Eucalyptus plantations: Main features shown by intensive monitoring in Congo and Brazil, Forest Ecology and Management, 259(9), 1771-1785, 2010.
24. Laloy, E., M. Weynants, Bielders, M. Vanclooster, and M. Javaux, How efficient are one-dimensional models to reproduce the hydrodynamic behavior of structured soils subjected to multi-step outflow experiments? Journal of Hydrology, 393, 37–52, 2010.
25. Lassabatere, L, R. Angulo-Jaramillo, D. Goutaland, L. Letellier, J.P. Gaudet, T. Winiarski, and C. Delolme, Effect of the settlement of sediments on water infiltration in two urban infiltration basins, Geoderma, 156(Issues 3-4), 316-325, 2010.
26. Lazaridis, N. K., and H. Keenan, Chitosan beads as barriers to the transport of azo dye in soil column, J. Hazardous Materials, 173(1-3), 144-150, 2010.
27. Li LiAng, Shi HaiBin, Jia JinFeng, et al., Simulation of water and salt transport of uncultivated land in Hetao Irrigation District in Inner Mongolia, Transactions of the Chinese Society of Agricultural Engineering, 26(1), 31-35, 2010.
28. Luo, Y. and M. Sophocleous, Seasonal groundwater contribution to crop-water use assessed with lysimeter observations and model simulations, Journal of Hydrology, , 389, 325-335, 2010.
29. Ma, D., M. Shao, J. Zhang, and Q. Wang, Validation of an analytical method for determining soil hydraulic properties of stony soils using experimental data, Geoderma, 159(3-4), 262-269, 2010.
30. Ma, Y., Shaoyuan Feng, Dongyuan Su, Guangyao Gao, Zailin Huo, Modeling water infiltration in a large layered soil column with a modified Green–Ampt model and HYDRUS-1D, Computers and Electronics in Agriculture, 71(1), S40-S47, 2010.
31. Mao, M. and L. Ren, An upscaling approach to simulate unsaturated flow in horizontally heterogeneous soils at field scale under flood irrigation, Agricultural Water Management, 97(12), 2020-2028, 2010.
32. Mastrocicco, M., N. Colombani, E. Salemi, and G. Castaldelli, Numerical assessment of effective evapotranspiration from maize plots to estimate groundwater recharge in lowlands, Agricultural Water Management, 97(9), 1389-1398, 2010.
33. Mattern, S., and M. Vanclooster, Estimating travel time of recharge water through a deep vadose zone using a transfer function model, Environ Fluid Mech., 10, 121–135, 2010.
34. Mohanram, A., Ch. Ray, R. W. Harvey, D. W. Metge, J. N. Ryan, J. Chorover, and D. D. Eberl, Comparison of transport and attachment behaviors of Cryptosporidium parvum oocysts and oocyst-sized microspheres being advected through three minerologically different granular porous media Water Research, 44, 5334-5344, 2010.
35. Moradzadeh M., Moazed H., Sayyad Gh. Ammonium motion modeling in a soil treated with zeolite, using HYDRUS-1D model, Shokoofan Scientific Journal of Agricultural Research, 2(5), 43-55, 2010.
36. Nikodem, A., R. Kodešová, O. Drábek, L. Bubeníčková, L. Borůvka, L. Pavlů, and V. Tejnecký, A Numerical Study of the Impact of Precipitation Redistribution in a Beech Forest Canopy on Water and Aluminum Transport in a Podzol, Vadose Zone J., 9 (2), 238–251, doi:10.2136/vzj2009.0083, 2010.
37. Nimmer, M., A. Thompson, and D. Misra, Modeling water table mounding and contaminant transport beneath storm-water infiltration basins, J. Hydrologic Engineering, 15(12), 963-973, 2010.
38. Price, J. S., and P. N. Whittington, Water Flow in Sphagnum Hummocks: Mesocosm Measurements and Modelling, Journal of Hydrology, In Press, Accepted Manuscript, 381( 3-4), 333-340, 2010.
39. Phogat, V., A. K. Yadav, R. S. Malik, S. Kumar, and J. Cox, Simulation of salt and water movement and estimation of water productivity of rice crop irrigated with saline water, Paddy Water Environ., DOI 10.1007/s10333-010-0213-7, 2010.
40. Pontedeiro, E. M., M. Th. van Genuchten, R. M. Cotta, J. Šimůnek, The effects of preferential flow and soil texture on the risk assessments of a NORM waste disposal site, Journal of Hazardous Materials, doi:10.1016/j.jhazmat.2009.09.100, 174(1-3), 648-655, 2010.
41. Schelle, H., S. C. Iden, A. Peters, and W. Durner, Analysis of the agreement of soil hydraulic properties obtained from multistep-outflow and evaporation methods, Vadose Zone Journal, 9(4), 1080-1091, 2010.
42. Schindler, J., W. Durner, G. von Unold, and L. Müller, Evaporation Method for Measuring Unsaturated Hydraulic Properties of Soils: Extending the Measurement Range, Soil Sci. Soc. Am. J., 74(4), 1071–1083, 2010.
43. Schneider, S. D. Jacques, and D. Mallants, Estimating unsaturated hydraulic properties of concrete C-15-A and mortar M1, Restricted Contract Report SCK*CEN-R-5051, 10/SSc/P-57, 2010.
44. Schwartz, R. C., R. L. Baumhardt, and S. R. Evett, Tillage effects on soil water redistribution and bare soil evaporation throughout a season, Soil & Tillage Research, 110, 221–229, 2010.
45. Singh, P. N., W. W. Wallender, M. P. Maneta, S. L. Lee, and B. A. Olsen, Sustainable root zone salinity and shallow water table in the context of land retirement, Journal of Irrigation and Drainage Engineering, 136(5), 289-299, 2010.
46. Steenpass, C., J. Vanderborght, M. Herbst, J. Šimůnek, and H. Vereecken, Estimating soil hydraulic properties from infrared measurements of soil surface temperatures and TDR data, Vadose Zone Journal, 9(4), 910-924, 2010.
47. Stumpp, Ch. and P. Maloszewski, Quantification of preferential flow and flow heterogeneities in an unsaturated soil planted with different crops using the environmental isotope 18O, Journal of Hydrology, 394, 407–415, 2010.
48. Thuyet, D. Q., T. Q. Hien, H. Watanabe, H. Saito, T. K. Phong, and T. Nishimura, Micro paddy lysimeter for monitoring solute transport in paddy environment, Paddy and Water Environment, 8(3), 235-245, DOI: 10.1007/s10333-010-0204-8, 2010.
49. Torkzaban, S., Y. Kim, M. Mulvihill, J. Wan, T. K. Tokunaga, Transport and deposition of functionalized CdTe nanoparticles in saturated porous media, Journal of Contaminant Hydrology, 118, 208–217, 2010.
50. Twarakavi, N. K. C., J. Šimůnek, and M. G. Schaap, Can texture-based classification optimally classify soils with respect to soil hydraulics?, Water Resources Research, 46, W01501, doi:10.1029/ 2009WR007939, 11 pp., 2010.
51. Twarakavi, N. K. C., H. Saito, J. Šimůnek, and M. Th. van Genuchten, Inverse modeling of vadose zone flow processes using squared -insensitivity loss function, Journal of Hydrology and Hydromechanics, 58(3), 188-200, 2010.
52. Valiantzas, J. D., New linearized two-parameter infiltration equation for direct determination of conductivity and sorptivity, Journal of Hydrology, 384( 1-2), 1-13, 2010.
53. Vanderborght, J., A. Graf, C. Steenpass, B. Scharnagl, N. Prolingheuer, M. Herbst, H.-J. H. Franssen, and H. Vereecken, Within-field variability of bare soil evaporation derived from Eddy covariance measurements, Special Section: Patterns, Vadose Zone Journal, 9(4), 943-954, 2010.
54. Wenninger, J., D. Tadesse Beza, and S. Uhlenbrook, Experimental investigations of water fluxes within the soil–vegetation–atmosphere system: Stable isotope mass-balance approach to partition evaporation and transpiration, Physics and Chemistry of the Earth, 35, 565–570, 2010.
55. Wang, H., Xiaotang Ju, Yongping Wei, Baoguo Li, Lulu Zhao, Kelin Hu, Simulation of bromide and nitrate leaching under heavy rainfall and high-intensity irrigation rates in North China Plain, Agricultural Water Management, 97(10), 1646-1654, 2010.
56. Wissmeier, L., and D. A. Barry, Implementation of variably saturated flow into PHREEQC for the simulation of biogeochemical reactions in the vadose zone, Environmental Modelling & Software, 25(4), 526-538, 2010.
57. Xie, T., X. Liu, and T. Sun, The effects of groundwater table and flood irrigation strategies on soil water and salt dynamics and reed water use in the Yellow River Delta, China, Ecological Modelling, 222(2), 265-280, 2010.
58. Zhang, K., I. G. Burns, D. J. Greenwood, J. P. Hammond, and P. J. White Developing a reliable strategy to infer the effective soil hydraulic properties from field evaporation experiments for agro-hydrological models, Agricultural Water Management, 97(3), 399-409, 2010.
59. Zhao, Y., S. Peth, R. Horn, J. Kruemmelbein, B. Ketzer, Y. Gao, J. Doerner, C. Bernhofer, and X. Peng, Modeling grazing effects on coupled water and heat fluxes in Inner Mongolia Grassland, Soil & Tillage Research, 109, 75–86, 2010.

2009

1. Bah A. R., O. Kravchuk, and G. Kirchhof, Sensitivity of drainage to rainfall, vegetation and soil characteristics, Computers And Electronics In Agriculture, 68(1), 1-8, 2009.
2. Bohnhoff, G. L., A. S. Ogorzalek, C. H. Benson, C. D. Shackelford, and P. Apiwantragoon, Field data and water-balance predictions for a monolithic cover in a semiarid climate, Journal of Geotechnical and Geoenvironmental Engineering, 135(3), 333-348, 2009.
3. Boudreau, J., J. Caron, and D. Elrick, J. Fortin, and J. Gallichand, Solute transport in sub-irrigated peat-based growing media, Canadian Journal Of Soil Science, 89(3), 301-313, 2009.
4. Bradford, S. A., S. Torkzaban, F. J. Leij, J. Šimůnek, and M. Th. van Genuchten, Modeling the coupled effects of pore space geometry and velocity on colloid transport and retention, Wat. Resour. Res., 45, W02414, doi:10.1029/2008WR007096, 15 pp., 2009.
5. Chen, W., L. Wu, A. C. Chang, and Z. Hou, Assessing the effect of long-term crop cultivation on distribution of Cd in the root zone, Ecological Modelling, 220(15), 1836-1843, 2009.
6. Cheviron, B., and Y. Coquet. Sensitivity Analysis of Transient-MIM HYDRUS-1D: Case Study Related to Pesticide Fate in Soils, Vadose Zone J., 8, 1064–1079, doi:10.2136/vzj2009.0023, 2009.
7. Crevoisier, D., A. Chanzy, and M. Voltz, Evaluation of the Ross fast solution of Richards' equation in unfavourable conditions for standard finite element methods, Advances In Water Resources, 32(6), 936-947, 2009.
8. de Jong van Lier, Q., J. C. van Dam, and K. Metselaar, Root Water Extraction under Combined Water and Osmotic Stress, Soil Sci. Soc. Am. J.. 73(3), 862-875, 2009.
9. De Wilde, T., J. Mertens, J. Šimůnek, K. Sniegowksi, J. Ryckeboer, P. Jaeken, D. Springael, and P. Spanoghe, Characterizing pesticide sorption and degradation in micro scale biopurification systems using column displacement experiments, Environmental Pollution, 157, 463-473, 2009.
10. De Wilde, T., P. Spanoghe, J. Mertens, K. Sniegowksi, J. Ryckeboer, P. Jaeken, and D. Springael, Characterizing pesticide sorption and degradation in macro scale biopurification systems using column displacement experiments, Environmental Pollution, 157, 1373-1381, 2009.
11. Dong, H. M., Q. J. Wang, and M. A. Sbal, Analytical method for estimating soil hydraulic parameters from horizontal absorption, Soil Sci. Soc. Am. J., 73(3), 727-736, 2009.
12. Dontsova, K. M., J. C. Pennington, C. Hayes, J. Šimůnek, and C. W. Williford, Dissolution and transport of 2,4-DNT and 2,6-DNT from M1 propellant, Chemosphere, 77 (4), 597-603, 2009.
13. Endo A, S. Mishima, and K. Kohyama, Modeling nitrate leaching on a cropped Andosol, Nutrient Cycling In Agroecosystems, 85(1), 41-61, 2009.
14. Fishkis, O., J. Ingwersen, and T. Streck, Phytolith transport in sandy sediment: Experiments and modeling, Geoderma, 151(3-4), 168-178, 2009.
15. Forkutsa, I., R. Sommer, Y. I. Shirokova, J. P. A. Lamers, K. Kienzler, B. Tischbein, C. Martius, P. L. G. Vlek, Modeling irrigated cotton with shallow groundwater in the Aral Sea Basin of Uzbekistan: I. Water dynamics, Irrig. Sci., DOI 10.1007/s00271-009-0148-1, 2009.
16. Forkutsa, I., R. Sommer, Y. I. Shirokova, J. P. A. Lamers, K. Kienzler, B. Tischbein, C. Martius, P. L. G. Vlek, Modeling irrigated cotton with shallow groundwater in the Aral Sea Basin of Uzbekistan: II. Soil salinity dynamics, Irrig. Sci., DOI 10.1007/s00271-009-0149-0, 2009.
17. Garg, K. K., B. S. Das, M. Safeeq, and P. B.S. Bhadoria, Measurement and modeling of soil water regime in a lowland paddy field showing preferential transport, Agricultural Water Management, 96(12), 1705-1714, 2009.
18. George, L. A., M. M. Dewoolkar, and D. Znidarcic, Simultaneous Laboratory Measurement of Acoustic and Hydraulic Properties of Unsaturated Soils, Vadose Zone J. 8(3), 633-642, 2009.
19. Gribb, M. M., I. Forkutsa, A. Hansen, D. G. Chandler, and J. P. McNamara, The Eff ect of Various Soil Hydraulic Property Estimates on Soil Moisture Simulations, Vadose Zone J., 8(2), 321-331, 2009.
20. Guan, H. and. J. L. Wilson, A hybrid dual-source model for potential evaporation and transpiration partitioning, Journal of Hydrology, 377(3-4), 405-416, 2009.
21. Guber, A. K., Y. A. Pachepsky, M. Th. van Genuchten, J. Šimůnek, D. Jacques, A. Nemes, T. J. Nicholson, and R. E. Cady, Multimodel simulation of water flow in a field soil using pedotransfer functions, Vadose Zone Journal, 8, 1-10, 2009.
22. Hinnell, A. C., N. Lazarovitch, and A. W. Warrick, Explicit infiltration function for boreholes under constant head conditions, Water Resour. Res., 45, W10429, doi:10.1029/2008WR007685, 2009.
23. Janssen, M. and B. Lennartz, Water losses through paddy bunds: Methods, experimental data, and simulation studies, Journal of Hydrology, 369(1-2), 142-153, 2009.
24. Jellali, S., T. Sediri, H. Kallali, M. Anane, and N. Jedidi, Analysis of hydraulic conditions and HRT on the basis of experiments and simulations on soil column, Desalination, 246( 1-3), 435-443, 2009.
25. Jimenez-Martinez, J. T. H. Skaggs, M. Th. van Genuchten, and L. Candela, A root zone modelling approach to estimating groundwater recharge from irrigated areas, J. Hydrol., 367(1-2), 138-149, 2009.
26. Karpf, C., J. Traenckner, and P. Krebs, Hydraulic modelling of sewage exfiltration, Water Science And Technology, 59(8), 1559-1565, 2009.
27. Kodešová,R., N. Vignozzi, M. Rohošková, T. Hájková, M. Kočárek, M. Pagliai, J. Kozák, and J. Šimůnek, Impact of varying soil structure on transport processes in soils, J. Contam. Hydrology, Special Issue “Flow Domains”, doi:10.1016/j.jconhyd.2008.10.008, 104(1-4), 107-125, 2009.
28. Krümmelbein, J., S. Peth, Y. Zhao, and R. Horn, Grazing-induced alterations of soil hydraulic properties and functions in Inner Mongolia, PR China, J. Plant Nutr. Soil Sci., 172, 769–776, 2009.
29. Kuntz, D., and P. Grathwohl Comparison of steady-state and transient flow conditions on reactive transport of contaminants in the vadose soil zone, Journal of Hydrology, 369(3-4), 225-233, 2009.
30. Lambot, S., E. Slob, J. Rhebergen, O. Lopera, K. Zaib Jadoon, and H. Vereecken, Remote Estimation of the Hydraulic Properties of a Sand Using Full-Waveform Integrated Hydrogeophysical Inversion of Time-Lapse, Off-Ground GPR Data, Vadose Zone J. 8(3), 743-754, 2009.
31. Lee, J., P. J. Fox, and J. J. Lenhart, Investigation of consolidation-induced solute transport. I: Effect of consolidation on transport parameters, Journal of Geotechnical and Geoenvironmental Engineering, 135(9), 1228-1238, 2009.
32. Legout, C., J. Molenat, and Y. Hamon, Experimental and Modeling Investigation of Unsaturated Solute Transport with Water-Table Fluctuation, Vadose Zone J.. 8, 21-31, 2009.
33. Li, Z. and H. Hong, Retardation of chromate through packed columns of surfactant-modified zeolite, Journal of Hazardous Materials, 162(2-3), 1487-1493, 2009.
34. Li, N., and L. Ren, Application of continuous time random walk theory to nonequilibrium transport in soil, J. Contam. Hydrol., 108, 134–151, 2009.
35. Ma DongHao, QuanJiu Wang, and MingAn Shao, Analytical Method for Estimating Soil Hydraulic Parameters from Horizontal Absorption, Soil Sci. Soc. Am. J., 73(3), 727-736, 2009.
36. Monteiro, A. L. N., A. D. D. Montenegro, S. M. G. Montenegro, et al., Partial salt leaching evaluation in an irrigated fluvissol through computational modeling, Engenharia Agricola, 29(2), 207-220, 2009.
37. Neukum, C., and R. Azzam, Quantitative assessment of intrinsic groundwater vulnerability to contamination using numerical simulations, Science of The Total Environment, 408(2), 245-254, 2009.
38. Ngoc, M. N., S. Dultz, and J. Kasbohm, Simulation of retention and transport of copper, lead and zinc in a paddy soil of the Red River Delta, Vietnam, Agriculture Ecosystems & Environment, 129(1-3), 8-16, 2009.
39. Paradelo, M., J. Šimůnek, J. C. Novoa-Muñoz, M. Arias-Estevez, and J. E. Lopez-Periago, Transport of copper oxychloride-based fungicide particles in saturated quartz sand, Environ. Sci. and Technol., 8(4), 8860-8866, 2009.
40. Phogat, V., R. S. Malik, and S. Kumar, Modelling the effect of canal bed elevation on seepage and water table rise in a sand box filled with loamy soil, Irrig. Sci., 27, 191–200, DOI 10.1007/s00271-008-0132-1, 2009.
41. Rozemeijer, J.C., H.P. Broers, F.C. van Geer, and M.F.P. Bierkens, Weather-induced temporal variations in nitrate concentrations in shallow groundwater, Journal of Hydrology, 378, 119–127, 2009.
42. Rudiš, M., P. Valenta, J. Valentová, and O. Nol, Assessment of the deposition of polluted sediments transferred by a catastrophic flood and related changes in groundwater quality, Journal of Hydrology, 369(3-4), 326-335, 2009.
43. Sander, T., and H. H. Gerke, Modelling field-data of preferential flow in paddy soil induced by earthworm burrows, J. Contam. Hydrol., doi:10.1016/j.jconhyd.2008.11.003, 104(1-4), 129-136, 2009.
44. Saito, H., and J. Šimůnek, Effects of meteorological models on the solution of the surface energy balance and soil temperature variations in bare soils, J. Hydrology, doi:10.1016/j.jhydrol.2009.05.019, 373(3-4), 545-561, 2009.
45. Sakai, M., N. Toride, and J. Šimůnek, Water and vapor movement with condensation and evaporation in a sandy column subject to temperature gradient, Soil Sci. Soc. Am. J., 73(3), 707-717, 2009.
46. Saso, J. K., Evaluating Nitrate Leaching Potential for Two Different Hydrological Soil Groups Using a Conservative Tracer, M. Sc. Thesis, The Faculty of Graduate Studies, The University of Guelph, pp. 93, 2009. $ Shah, N., and M. Ross, Variability in specific yield under shallow water table conditions, Journal of Hydrologic Engineering, 14(12), 1290-1298, 2009.
47. Šimůnek, J. and J. W. Hopmans, Modeling compensated root water and nutrient uptake, Ecological Modeling, doi:10.1016/j.ecolmodel.2008.11.004, 220(4), 505-521, 2009.
48. Šimůnek, J., D. Jacques, N. K. C. Twarakavi, and M. Th. van Genuchten, Selected HYDRUS modules for modeling subsurface flow and contaminant transport as influenced by biological processes at various scales, Biologia, 64(3), 465-469, DOI: 10.2478/s11756-009-0106-7, 2009.
49. Soulis, K. X., J. D. Valiantzas, N. Dercas, and P. A. Londra, Investigation of the direct runoff generation mechanism for the analysis of the SCS-CN method applicability to a partial area experimental watershed, Hydrol. Earth Syst. Sci., 13, 605–615, 2009.
50. Stingaciu, L. R., A. Pohlmeier, P. Blümler, L. Weihermüller, D. van Dusschoten, S. Stapf, and H. Vereecken, Characterization of unsaturated porous media by high‐field and low‐field NMR relaxometry, Water Resour. Res., 45, W08412, doi:10.1029/2008WR007459, 2009.
51. Stumpp, C., G. Nützmann, S. Maciejewski, and P. Maloszewski, A comparative modeling study of a dual tracer experiment in a large lysimeter under atmospheric conditions, J. Hydrol., 375, 566–577, 2009.
52. Stumpp, C., P. Maloszewski, W. Stichler, and J. Fank, Environmental isotope (δ18O) and hydrological data to assess water flow in unsaturated soils planted with different crops: Case study lysimeter station “Wagna” (Austria), Journal of Hydrology, 369(1-2), 198-208, 2009.
53. Stumpp, C., W. Stichler, P. Maloszewski, Application of the environmental isotope δ18O to study water flow in unsaturated soils planted with different crops: Case study of a weighable lysimeter from the research field in Neuherberg, Germany, Journal of Hydrology, 368(1-4), 68-78, 2009.
54. Twarakavi, N. K. C., J. Šimůnek, and M. Schaap, Support vector machine based pedotransfer functions for estimation of soil hydraulic parameters, Soil Sci. Soc. Am. J., 73(5), 1443-1452, 2009.
55. Twarakavi, N. K. C, M. Sakai, and J. Šimůnek, An objective analysis of the dynamic nature of field capacity, Water Resour. Res., 45, W10410, doi:10.1029/2009WR007944, pp. 9, 2009.
56. Unold, M., R. Kasteel, J. Groeneweg, and H. Vereecken, Transport and transformation of sulfadiazine in soil columns packed with a silty loam and a loamy sand, J. Contam. Hydrology, 103(1-2), 38–47, 2009.
57. Valiantzas, J. D., E. D. Pollalis, K. X. Soulis, and P. A. Londra, Modified form of the extended Kostiakov equation including various initial and boundary conditions, Journal of Irrigation and Drainage Engineering, 135(4), 450-458, 2009.
58. van den Berg, E. H., E. Perfect, C. Tu, P. S. K. Knappett, T. P. Leao, and R. W. Donat, Unsaturated Hydraulic Conductivity Measurements with Centrifuges: A Review, Vadose Zone J. 8(3), 531-547, 2009.
59. Venkatraman, K., and N. Ashwath, Phytocapping: Importance of Tree Selection and Soil Thickness, Water Air Soil Pollut: Focus, 9, 421–430, 2009.
60. Violette, S., G. Boulicot, and S. M. Gorelick, Tsunami-induced groundwater salinization in southeastern India, Comptes Rendus Geosciences, 341(4), 339-346, 2009.
61. Wang, T., V. A. Zlotnik, J. Šimůnek, and M. G. Schaap, Using pedotransfer functions in vadose zone models for estimating groundwater recharge in semiarid regions, Water Resour. Res., 45, W04412, doi:10.1029/2008WR006903, 12 pp., 2009.
62. Weihermüller, L., J. A. Huisman, A. Graf, M. Herbst, and J.-M. Sequaris, Multistep Outflow Experiments to Determine Soil Physical and Carbon Dioxide Production Parameters, Vadose Zone J. 8(3), 772-782, 2009.
63. Wissmeier, L., and D. A. Barry, Effect of mineral reactions on the hydraulic properties of unsaturated soils: Model development and application, Adv. Water Resour., 32, 1241-1254, 2009.
64. Wollschläger, U., T. Pfaff, and K. Roth, Field-scale apparent hydraulic parameterisation obtained from TDR time series and inverse modeling, Hydrol. Earth Syst. Sci., 13, 1953–1966, 2009.
65. Young, M. H., T. G. Caldwell, D. G. Meadows, and L. F. Fenstermaker, Variability of soil physical and hydraulic properties at the Mojave Global Change Facility, Nevada: Implications for water budget and evapotranspiration, J. Arid Environ., 73(8), 733-744, 2009.
66. Zhang, Q., A. D. Werner, R. F. Aviyanto, and J. L. Hutson, Influence of soil moisture hysteresis on the functioning of capillary barriers, Hydrological Processes, 23(9), 1369-1375, 2009.
67. Zeng, Y., Z. Su, L.Wan, Z. Yang, T. Zhang, H. Tian, X. Shi, X. Wang, and W. Cao, Diurnal pattern of the drying front in desert and its application for determining the effective infiltration, Hydrol. Earth Syst. Sci., 13, 703–714, 2009.
68. Zeng, Y., L. Wan, Z. Su, H. Saito, K. Huang, and X. Wang, Diurnal soil water dynamics in the shallow vadose zone (field site of China University of Geosciences, China), Environmental Geology, 58(1), 11-23, 2009.
69. Zhu, J. and D. Sun, Effective Soil Hydraulic Parameters for Transient Flows in Heterogeneous Soils, Vadose Zone J., 8(2), 301-309, 2009.
70. Zhu, Y. H. , L. L. Ren, T. H. Skaggs, et al., Simulation of Populus euphratica root uptake of groundwater in an arid woodland of the Ejina Basin, China, Hydrological Processes, 23(17), 2460-2469, 2009.

2008

1. Arnon Shai, Ofer Dahan, Sara Elhanany, Keren Cohen, Irena Pankratov, Amit Gross, Zeev Ronen, Shahar Baram and Laurence S. Shore, Transport of Testosterone and Estrogen from Dairy-Farm Waste Lagoons to Groundwater, Environ. Sci. Technol., 42 (15), 5521–5526, 2008.
2. Bethune, M. G., B. Selle, and Q. Wang, Understanding and Predicting Deep Percolation under Surface Irrigation, Water Resour. Res., 44, W12430, doi:10.1029/2007WR006380, 2008.
3. Charles, K. J., F. C. Souter, D. L. Baker, C. M. Davies, J. F. Schijven, D. J. Roser, D. A. Deere, P. K. Priscott, and N. J. Ashbolt, Fate and transport of viruses during sewage treatment in a mound system, Water Research, 42(12), 3047-3056, 2008.
4. Choy, C. C., M. Wazne, and X. Meng, Application of an empirical transport model to simulate retention of nanocrystalline titanium dioxide in sand columns, Chemosphere, 71(9), 1794-1801, 2008.
5. Close, M. E., R. Lee, A. K. Sarmah, L. Pang, R. Dann, G. N. Magesan, J. P. C. Watt, and K. W. Vincent, Pesticide sorption and degradation characteristics in New Zealand soils—a synthesis from seven field trials, New Zealand Journal of Crop and Horticultural Science, 36(1), 9-30, 2008.
6. de Lange, R., R. Beck, N. van de Giesen, and J. Friesen, Scatterometer-derived soil moisture calibrated for soil texture with a one-dimensional water-flow model, IEEE Transactions on Geoscience and Remote Sensing, 46(12), 2008.
7. de Wilde, T., J. Mertens, P. Spanoghe, J. Ryckeboer, P. Jaeken, and D. Springael, Sorption kinetics and its effects on retention and leaching. Chemosphere, 72(3), 509-516, 2008.
8. Desmet, N. J. S., S. Van Belleghem, P. Seuntjens, T. J. Bouma, K. Buis, and P. Meire, Quantification of the impact of macrophytes on oxygen dynamics and nitrogen retention in a vegetated lowland river, Physics and Chemistry of the Earth, xx, xxx–xxx, 2008.
9. Durner, W., U. Jansen, And S. C. Iden, Effective hydraulic properties of layered soils at the lysimeter scale determined by inverse modeling, Europ. J. Soil Sci., 59(1), 114–124, 2008.
10. Fan, Z., and F. X. M. Casey, Estimating Solute Transport Parameters Using Stochastic Ranking Evolutionary Strategy, Vadose Zone Journal, 7(1), 124-130, 2008.
11. Fox, P. J., and J. Lee, Model for consolidation-induced solute transport with nonlinear and nonequilibrium sorption, International Journal of Geomechanics, 8(3), 188-198, 2008.
12. Fujimaki, H., Y. Ando, Y. Cui, and Mitsuhiro Inoue, Parameter Estimation of a Root Water Uptake Model under Salinity Stress, doi:10.2136/vzj2007.0025, Vadose Zone J., 7, 31–38, 2008.
13. Gargiulo, G., S. A. Bradford, J. Šimůnek, P. Ustohal, H. Vereecken, and E. Klumpp, Bacteria transport and deposition under unsaturated conditions: the role of bacteria surface hydrophobicity, Vadose Zone Journal, 7(2), doi:10.2136/vzj2007.0068, 406-419, 2008.
14. Gerke, H. H. and A. Badorreck, Single- and dual-porosity modeling of flow in reclaimed mine soil cores with embedded lignitic fragments, J. Contam. Hydrol., (in press), 2008.
15. Grünberger, O., P. Macaigne, J.-L. Michelot, C. Hartmann and S. Sukchan, Salt crust development in paddy fields owing to soil evaporation and drainage: Contribution of chloride and deuterium profile analysis, J. Hydrology, 348(1-2), 110-123, 2008.
16. Gusev, E. M., V. Shtekauerova, K. Steglova, Yu. Maierchak, A. G. Kocharyan, and K. E. Nikitskaya, Determination of Soil Hydrophysical Characteristics in the Ivankovo Reservoir Watershed, Water Resources, 35(3), 330–338, © Pleiades Publishing, Ltd., 2008.
17. Hao, F.-H., Y.-W. Ou, Y. Yue, Zh.-F. Yang, and P. Li, Analysis of water cycle characteristics and soil water movement in the agricultural irrigation area in Inner Mongolia, Acta Scientiae Circunstantiae, 28(5), 825-831, 2008.
18. Hao, F.-H., W. Sun, A.-Y. Zeng, P. Li, J.-X. Zhang, and Y. Yue, Simulation of N transfer under different irrigation and fertilization scenarios in the Hetao irrigation area using HYDRUS-1D model, Acta Scientiae Circunstantiae, 28(5), 853-858, 2008.
19. Haruta, S., W. Chen, J. Gan, J. Šimůnek, A. C. Chang, and L. Wu, Leaching risk of N-nitrosodimethylamine (NDMA) in soil receiving reclaimed wastewater, Highlighted article in Ecotoxicology and Environmental Safety, 69, 374–380, 2008.
20. Hilten, R. N., T. M. Lawrence, and E. W. Tollner, Modeling stormwater runoff from green roofs with Hydrus-1D, Journal of Hydrology, 358(3), 288-293, 2008.
21. Hu, K, B. Li, D. Chen, Y. Zhang, and R. Edis, Simulation of nitrate leaching under irrigated maize on sandy soil in desert oasis in Inner Mongolia, China, Agricultural Water Management, 95(10), 1180-1188, 2008.
22. Ionescu, A., N. Maes, and Dirk Mallants, Modelling transport of 14C-labelled natural organic matter (NOM) in boom clay, Mater. Res. Soc. Symp. Proc. Vol. 1107, Materials Research Society, pp. 8, 2008.
23. Jandl, R., F. Herman, S. Smidt, K. Butterbach-Bahl, M. Englisch, K. Katzensteiner, M. Lexer, F. Strebl, and S. Zechmeister-Boltenstern, Nitrogen dynamics of a mountain forest on dolomitic limestone – A scenario-based risk assessment, Environmental Pollution, 155(3), 512-516, 2008.
24. Kartha, S. A. and R. Srivastava, Effect of immobile water content on contaminant transport in unsaturated zone, Journal of Hydro-Environment Research, 1(3), 206-215, 2008.
25. Kluge, B., G. Wessolek, M. Facklam, M. Lorenz, K. Schwärzel, Long-term carbon loss and CO2-C release of drained peatland soils in northeast Germany, European Journal of Soil Science, 59(6), 1076-1086, 2008.
26. Li, Z., D. Yuansheng, and H. Hanlie, Transport of micelles of cationic surfactants through clinoptilolite zeolite, Microporous and Mesoporous Materials, 116(1-3), 473-477, 2008.
27. Kodešová, R., M. Kočárek, V. Kodeš, J. Šimůnek, and J. Kozák, Impact of soil micromorphological features on water flow and herbicide transport in soils, Vadose Zone Journal, doi:10.2136/VZJ2007.0079, Special Issue “Vadose Zone Modeling”, 7(2), 798-809, 2008.
28. Looms, M. C., A. Binley, K. H. Jensen, L. Nielsen, and T. M. Hansen, Identifying Unsaturated Hydraulic Parameters Using an Integrated Data Fusion Approach on Cross-Borehole Geophysical Data, Vadose Zone Journal, 7(1), 238-248, 2008.
29. Loukili, Y., A. D. Woodbury, and K. R. Snelgrove, SABAE-HW: An enhanced water balance prediction in the canadian land surface scheme compared with existing models, Vadose Zone J. , 7, doi:10.2136/vzj2007.0081, 865–877, 2008.
30. Ma, D. & Mingan Shao, Simulating infiltration into stony soils with a dual-porosity model, Europ. J. Soil Sci., OnlineEarly Articles, Published article online: 23-May-2008, doi: 10.1111/j.1365-2389.2008.01055.x, 2008.
31. Nehls, T., G. Jozefaciuk, Z. Sokolowska, M. Hajnos, and G. Wessolek, Filter properties of seam material from paved urban soils, Hydrol. Earth Syst. Sci., 12, 691–702, 2008.
32. Novak, V., and M. Th. van Genuchten, Using the transpiration regime to estimate biomass production, Soil Science, 173(6), 401-407, 2008.
33. Ogorzalek, A. S., G. L. Bohnhoff, C. D. Shackelford, C. H. Benson, and P. Apiwantragoon, Comparison of field data and water-balance predictions for a capillary barrier cover, Journal of Geotechnical and Geoenvironmental Engineering, 134(4), 470-486, 2008.
34. Pang, L., M. McLeod, J. Aislabie, J. Šimůnek, M. Close, and R. Hector, Modeling transport of fecal coliforms and Salmonella bacteriophage in ten undisturbed New Zealand soils under dairy shed effluent irrigation, Vadose Zone Journal , 7(1), 97-111, 2008.
35. Peters, A. and W. Durner, A simple model for describing hydraulic conductivity in unsaturated porous media accounting for film and capillary flow, Water Resour. Res., 44, W11417, doi:10.1029/2008WR007136, 2008.
36. Selle, B., G. Lischeid, and B. Huwe, Effective modelling of percolation at the landscape scale using data-based approaches, Computers and Geosciences, 34(6), 699-713, 2008.
37. Shai, A., O. Dahan, S. Elhanany, K. Cohen, I. Pankratov, A. Gross, Z. Ronen, S. Baram, and L. S. Shore, Transport of testosterone and estrogen from dairy-farm waste lagoons to groundwater, Environ. Sci. Technol., 42 (15), 5521–5526, 2008.
38. Shang, J., M. Flury, G. Chen, and J. Zhuang, Impact of flow rate, water content, and capillary forces on in situ colloid mobilization during infiltration in unsaturated sediments, Water Resour. Res., 44, W06411, doi:10.1029/2007WR006516, 2008.
39. Sharma, P., H. M. Abdou, and M. Flury, Effect of the lower boundary condition and flotation on colloid mobilization in unsaturated sandy sediments, Vadose Zone J., 7, 930-940, 2008.
40. Shen, C., Y. Huang, B. Li, and Y. Jin, Effects of solution chemistry on straining of colloids in porous media under unfavorable conditions, Water Resour. Res., 44, W05419, doi:10.1029/2007WR006580, 2008.
41. Šimůnek, J. J. M. Köhne, R. Kodešová, and M. Šejna, Simulating nonequilibrium movement of water, solutes, and particles using HYDRUS: A review of recent applications, Soil and Water Research, 3(Special Issue 1), S42-S51, 2008.
42. Šimůnek, J., M. Th. van Genuchten, and M. Šejna, Development and applications of the HYDRUS and STANMOD software packages, and related codes, Vadose Zone Journal, doi:10.2136/VZJ2007.0077, Special Issue “Vadose Zone Modeling”, 7(2), 587-600, 2008.
43. Šimůnek, J. and M. Th. van Genuchten, Modeling nonequilibrium flow and transport with HYDRUS, Vadose Zone Journal, doi:10.2136/VZJ2007.0074, Special Issue “Vadose Zone Modeling”, 7(2), 782-797, 2008.
44. Suleiman, A. A., Modeling daily soil water dynamics during vertical drainage using the incoming flow concept, Catena, 73(3), 312-320, 2008.
45. Talbot, C. A., and F. L. Ogden, A method for computing infiltration and redistribution in a discretized moisture content domain, Water Resour. Res., 44, W08453, doi:10.1029/2008WR006815, 2008.
46. Tazehkand, S. S., S. Torkzaban, S. A. Bradford, and S. L. Walker, Cell Preparation Methods Influence Escherichia coli D21g Surface Chemistry and Transport in Saturated Sand, J. Environ. Qual., 37, 2108–2115, 2008.
47. Tang, G., E. Perfect, E. H. van den Berg, M. A. Mayes, and J. C. Parker, Estimating Effective Hydraulic Parameters of Unsaturated Layered Sediments Using a Cantor Bar Composite Medium Model, Vadose Zone Journal, 7(2), 493-499, 2008.
48. Torkzaban, S., Bradford, S. A., M. Th. van Genuchten, S. L. Walker, Colloid transport in unsaturated porous media: The role of water content and ionic strength on particle straining, J. Contam. Hydrology, 96, 113–127, 2008.
49. Torkzaban, S., S. S. Tazehkand, S. L. Walker, and S. A. Bradford, Transport and fate of bacteria in porous media: Coupled effects of chemical conditions and pore space geometry, Water Resour. Res., 44, W04403, doi:10.1029/2007WR006541, 2008.
50. Tripp, D. R., and J. D. Niemann, Evaluating the parameter identifiability and structural validity of a probability-distributed model for soil moisture, Journal of Hydrology, 353(1), 93-108, 2008.
51. Twarakavi, N. K. C., H. Saito, and J. Šimůnek, A new approach to estimate soil hydraulic parameters using only soil water retention data, doi:10.2136/sssaj2006.0342, Soil Sci. Soc. Am. J., 72(2), 471-479. 2008.
52. Twarakavi, N. K. C., J. Šimůnek, and H. S. Seo, Evaluating interactions between groundwater and vadose zone using HYDRUS-based flow package for MODFLOW, Vadose Zone Journal, doi:10.2136/VZJ2007.0082, Special Issue “Vadose Zone Modeling”, 7(2), 757-768, 2008.
53. Valiantzas, J. D., and P.A. Londra, Direct determination of the Brooks–Corey hydraulic functions by fitting an extended power function to the outflow method data, Journal of Hydrology, 362(1-2), 128-133, 2008.
54. van der Grift, B. and J. Griffioen, Modelling assessment of regional groundwater contamination due to historic smelter emissions of heavy metals, Journal of Contaminant Hydrology, 96(1), 48-68, 2008.
55. Vrugt, J. A., P. H. Stauffer, T. Wohling, B. A. Robinson, and V. V. Vesselinov, Inverse modeling of subsurface flow and transport properties: A review with new developments, Vadose Zone Journal, 7(2), 843-864, 2008.
56. Wissmeier, L., and D. A. Barry, Reactive transport in unsaturated soil: Comprehensive modeling of the dynamic spatial and temporal mass balance of water and chemical components, Adv. Water Resour., 31(5), 858-875, 2008.
57. Wöhling, T., and J. A. Vrugt, Combining multiobjective optimization and Bayesian model averaging to calibrate forecast ensembles of soil hydraulic models, Water Resour. Res., 44, W12432, doi:10.1029/2008WR007154, 2008.
58. Wöhling, T., J. A. Vrugt, and G. F. Barkle, Comparison of three multiobjective optimization algorithms for inverse modeling of vadose zone hydraulic properties, Soil Sci. Soc. Am. J., 72(2), 305-319, 2008.
59. Yin, J., M. H. Young, and Z. B. Yu, Effects of paleoclimate and time-varying canopy structures on paleowater fluxes, Journal Of Geophysical Research-Atmospheres, 113(D6), Art. No. D06103, 2008.
60. Zacharias, S., and K. Bohne, Attempt of a flux-based evaluation of field capacity, J. Plant Nutr. Soil Sci., 171, 399–408, 2008.
61. Zeng, Y., L. Wan, Z, Su, H. Saito, K. Huang, and X. Wang, Diurnal soil water dynamics in the shallow vadose zone (field site of China University of Geosciences, China), Environ. Geol., DOI 10.1007/s00254-008-1485-8, 2008.

2007

1. Araki, M., A. Shimizu, J. Toriyama, E. Ito, N. Kabeya, T. Nobuhiro, B. Tith, S. Pol, S. Lim, S. Khorn, P. Pith, S. Det, S. Ohta, and M. Kanzaki, Changes of Vertical Soil Moisture Conditions of a Dry Evergreen Forest in Kampong Thom, Cambodia, In H. Sawada, M. Araki, N.A. Chappell, J.V. LaFrankie, A. Shimizu (Eds.), Forest Environments in the Mekong River Basin, Springer Japan, ISBN 978-4-431-46500-3, 75-86, 2007.
2. Assouline, S., J. S. Selker, and J.-Y. Parlange, A simple accurate method to predict time of ponding under variable intensity rainfall, Wat. Resour. Res., 43, W03426, doi:10.1029/2006WR005138, 2007.
3. Bashir, R., D. F. Stolle, and J. E. Smith, Flux-based alternative formulation for variably saturated subsurface flow, Journal of Hydrologic Engineering, 12(5), 501-512, 2007.
4. Belk, E. L., D. Markewitz, T. C. Rasmussen, E. J. M. Carvalho, D. C. Nepstad, and E. A. Davidson, Modeling the effects of throughfall reduction on soil water content in a Brazilian Oxisol under a moist tropical forest, Water Resour. Res., 43, W08432, doi:10.1029/2006WR005493, 2007.
5. Benson, C. H., Modeling unsaturated flow and atmospheric interactions, book chapter in Theoretical and Numerical Unsaturated Soil Mechanics, ed. by T. Schanz, Book Series "Springer Proceedings in Physics", Volume 113, Springer, Berlin, ISBN: 978-3-540-69876-0, 187-201, 2007.
6. Bumgarner, J. R., and J. E. McCray, Estimating biozone hydraulic conductivity in wastewater soil-infiltration systems using inverse numerical modeling, Water Research, 41(11), 2349-2360, 2007.
7. Communar, G. and R. Keren, Effect of transient irrigation on boron transport in soils, Soil Sci. Soc. Am. J., 71, 306–313, 2007.
8. Dahiya, R., J. Ingwersen, and T. Streck, The effect of mulching and tillage on the water and temperature regimes of a loess soil: Experimental findings and modeling, Soil & Tillage Research, 96(1), 52-63, 2007.
9. Dousset, S., M. Thevenot, V. Pot, J. Šimůnek, and F. Andreux, Evaluating equilibrium and non-equilibrium transport of bromide and isoproturon in disturbed and undisturbed soil columns, J. Contam. Hydrol., 94, 261-276, 2007.
10. Fan, Z., F. X. M. Casey, H. Hakk, and G. L. Larsen, Discerning and modeling the fate and transport of testosterone in undisturbed soil, J. Environ. Qual., 36, 864-873, 2007.
11. Foppen, J. W., M. van Herwerden, and J. Schijven, Measuring and modelling straining of Escherichia coli in saturated porous media, J. Contam Hydrology, 93(1-4), 236-254, 2007.
12. Gargiulo, G., S. A. Bradford, J. Šimůnek, P. Ustohal, H. Vereecken, and E. Klumpp, Transport and deposition of metabolically active and stationary phase Deinococcus Radiodurans in unsaturated porous media, Environ. Sci. and Technol., 41(4), 1265-1271, 2007.
13. Gargiulo, G., S. A. Bradford, J. Šimůnek, P. Ustohal, H. Vereecken, and E. Klumpp, Bacteria transport and deposition under unsaturated conditions: the role of the matrix grain size and the bacteria surface protein, J. Contam. Hydrology, 92 doi: 10.1016/j.jconhyd.2007.01.009, 255-273, 2007.
14. Heatwole, K. K. and J. E. McCray, Modeling potential vadose-zone transport of nitrogen from onsite wastewater systems at the development scale, J. Contam. Hydrology, 91(1-2), 184–201, 2007.
15. Hilten, R. N., and T. M. Lawrence, Using green roofs and other BMPs to reduce the need for stormwater retention capacity requirements, 2nd National Low Impact Development Conference 2007, 226-239, 2007.
16. Hu, K. L., B. G. Li, Y. Chen, and Y. Q Guo, Coupled simulation on crop growth and soil water-heat-nitrogen transport. I. Model, J. Hydraul. Eng., 38(7), 779-785, 2007 (in Chinese).
17. Hu, K. L., R. E. White, D. L. Chen, B. G. Li, and W. D. Li, Stochastic simulation of water drainage at the field scale and its application to irrigation management, Agricultural Water Management, 89(1-2), 123-130, 2007.
18. Ibrakhimov, M., A. Khamzina, I. Forkutsa, G. Paluasheva, J. P. A. Lamers, B. Tischbein, P. L. G. Vlek, and C. Martius, Groundwater table and salinity: Spatial and temporal distribution and influence on soil salinization in Khorezm region (Uzbekistan, Aral Sea Basin), Irrig Drainage Syst, 21, 219–236, 2007.
19. Iden, S. C., and W. Durner, Free‐form estimation of the unsaturated soil hydraulic properties by inverse modeling using global optimization, Water Resour. Res., 43, W07451, doi:10.1029/2006WR005845, 2007.
20. Jin, L, K. L. Hu, B. G. Li, and Y. S. Gong, Coupled simulation on crop growth and soil water-heat-nitrogen transport. I. Model validation and application, J. Hydraul. Eng., 38(8), 972-980, 2007 (in Chinese).
21. Leij, F. J., A. Sciortino, R. Haverkamp, J. M. Soria Ugalde, Aggregation of vertical flow in the vadose zone with auto- and cross-correlated hydraulic properties, Journal of Hydrology, 338 (1), 96-112, 2007.
22. Lewandowska, J., T. N. Dung, M. Vauclin, H. Bertin, Water drainage in double-porosity soils: experiments and micro-macro modeling, J. Geotech. Geoenviron. Eng., 2007.
23. Lu, X. H., and M. G. Jin, One-dimensional unsaturated flow modeling in Luan representative zone of the North China plain, Journal Of China University Of Geosciences, 18, 59-61 Sp. Iss., SI, 2007.
24. Nahlawi, H., A. Bouazza, and J. Kodikara, Characterisation of geotextiles water retention using a modified capillary pressure cell, Geotextiles and Geomembranes, 25(3), 186-193, 2007.
25. Ndiaye, B., J. Molenat, V. Hallaire, C. Gascuel, and Y. Hamon, Y., Effects of agricultural practices on hydraulic properties and water movement in soils in Brittany (France), Soil & Tillage Research, 93(2), 251-263, 2007.
26. Papiernik, S. K., S. R. Yates, W. C. Koskinen, and B. Barber, Processes affecting the dissipation of the herbicide isoxaflutole and its diketonitrile metabolite in agricultural soils under field conditions. Journal of Agricultural and Food Chemistry, 55(21), 8630-8639, 2007.
27. Rungvetvuthivitaya, M., Ch. Ray, and R. E. Green, Postaudit study of DBCP and EDB contamination in the Pearl Harbor aquifer, Journal of Hydrologic Engineering, 12(6), 549-558, 2007.
28. Saito, H., J. Šimůnek, and N. Toride, Prediction of long-term changes in soil water content and temperature in bare soils: Determining surface boundary conditions from estimated meteorological information, J. Jpn. Soc. Soil Physics, 107, 79-96, 2007.
29. Shah, N., N. Mahmood, and M. Ross, Extinction depth and evapotranspiration from ground water under selected land covers, Ground Water, 45(3), 329-338, 2007.
30. Suárez, F., J. Bachmann, J. F. Muñoz, C. Ortiz, S. W. Tyler, C. Alister, M. Kogan, Transport of simazine in unsaturated sandy soil and predictions of its leaching under hypothetical field conditions, J. Contam. Hydrology, 94, 166–177, 2007.
31. Tsang, D. C. W., W. Zhang, I. M. C. Lo, Modeling Cadmium transport in soils using sequential extraction, batch, and miscible displacement experiments, Soil Sci. Soc. Amer. J., 71(3), 674-681, 2007.
32. Tymchak, M. P., and R. Torres, Effects of variable rainfall intensity on the unsaturated zone response of a forested sandy hillslope, Water Resour. Res., 43, W06431, doi:10.1029/2005WR004584, 2007.
33. Tyner, J. S. W. C. Wright, and R. E. Yoder, Identifying long-term preferential and matrix flow recharge at the field scale, Transactions of the ASABE, 50(6), 2001-2006, 2007.
34. Valiantzas, J. D., P. Londra, and A. Sassalou, Explicit formulae for soil water diffusivity using the one-step outflow technique, Soil Sci. Soc. Am. J., 71, 1685–1693, 2007.
35. Warrick, A. W., and N. Lazarovitch, Infiltration from a strip source, Water Resour. Res., 43, W03420, doi:10.1029/2006WR004975, 2007.
36. Warrick, A. W., N. Lazarovitch, A. Furman; and D. Zerihun, Explicit infiltration function for furrows, Journal of Irrigation and Drainage Engineering, 133(4), 307-313, 2007.
37. Watanabe, K., N. Toride, M. Sakai, and J. Šimůnek, Numerical modeling of water, heat, and solute transport during soil freezing, J. Jpn. Soc. Soil Physics, 106, 21-32, 2007.
38. Wehrhan, A., R. Kasteel, J. Šimůnek, J. Groeneweg, H. Vereecken, Transport of sulfadiazine in soil columns – experiments and modeling approaches, J. Contam. Hydrology, 89(1-2), 107-135, 2007.
39. Zakerinia, M., F. Abbasi, and T. Sohrabi, Evaluating Temporal Variations of Soil Hydraulic Conductivity Using Inverse Optimization Technique, Journal of Agricultural Engineering Research, 8(3), 17-30, in Persian with English abstract, 2007.
40. Zhang, H. M., B. Y. Su, P. H. Liu, and W. Zhang, Experimental Study of Fluorine Transport Rules in Unsaturated Stratified Soil, Journal of China University of Mining and Technology, 17(3), 382-386, 2007.
41. Zlotnik, V. A., T. Wang, J. Nieber, and J. Šimůnek, Verification of numerical solutions of the Richards equation using a traveling wave solution, Advances in Water Resources, 30, 1973-1980, 2007.

2006

1. Bahaminyakamwe, L., J. Šimůnek, J. Dane, J. F. Adams, and J. W. Odom, Copper mobility in soils as affected by sewage sludge and low molecular weight organic acids, Soil Sci., 171(1), 29-38, 2006.
2. Bertling S., F. Degryse, I. O. Wallinder, E. Smolders, C. Leygraf, Model studies of corrosion-induced copper runoff fate in soil, Environmental Toxicology and Chemistry, 25(3), 683-691, 2006.
3. Blasch, K. W., T. P. A. Ferré, J. P. Hoffmann, and J. B. Fleming, Relative contributions of transient and steady state infiltration during ephemeral streamflow, Water Resour. Res., 42, W08405, doi:10.1029/2005WR004049, 2006.
4. Bradford, S. A., J. Šimůnek, and S. L. Walker, Transport and straining of E. coli O157:H7 in saturated porous media, Water Resour. Res., 42, W12S12, doi:10.1029/2005WR004805, 12 pp., 2006.
5. Bradford, S. A., Y. F. Tadassa, and Y. Pachepsky, Transport of Giardia and manure suspensions in saturated porous media, J. Environ. Qual., 35, 749-757, 2006.
6. Bradford, S. A., Y. F. Tadassa, and Y. Jin, Transport of coliphage in the presence and absence of manure suspension, J. Environ. Qual., 35, 1692-1701, 2006.
7. Bradford, S. A., and M. Bettahar, Concentration dependent transport of colloids in saturated porous media, Journal of Contaminant Hydrology, 82(1), 99-117, 2006.
8. Butters, G. L., and P. Duchateau, Continuous flow method for rapid measurement of soil hydraulic properties, Vadose Zone J., 1, 239-251, 2006.
9. Chen, L., and M. H. Young, Green‐Ampt infiltration model for sloping surfaces, Water Resour. Res., 42, W07420, doi:10.1029/2005WR004468, 2006.
10. Das, N. N. and B. P. Mohanty, Root Zone Soil Moisture Assessment Using Remote Sensing and Vadose Zone Modeling, Vadose Zone Journal, 5, 296–307, 2006.
11. Degryse, F., and E. Smolders, Mobility of Cd and Zn in polluted and unpolluted Spodosols, Europ. J. Soil Sci., 57(2), 122–133, 2006.
12. Dontsova, K. M., S. L. Yost, J. Šimůnek, J. C. Pennington, C. Williford, Dissolution and transport of TNT, RDX, and Composition B in saturated soil columns, J. of Environ. Quality, 35, 2043-2054, 2006.
13. Fan, Z., F. X. M. Casey, G. L. Larsen, and H. Hakk, Fate and transport of 1278-TCDD, 1378-TCDD, and 1478-TCDD in soil-water systems, Science of the Total Environment, 371(1), 323-333, 2006.
14. Guber, A. K., Ya. A. Pachepsky, M. Th. van Genuchten, W. J. Rawls, J. Šimůnek, D. Jacques, T. J. Nicholson, and R. E. Cady, Field-scale water flow simulations using ensembles of pedotransfer functions for soil water retention, Vadose Zone Journal, 5, 234–247, 2006.
15. Hansson K., and L. C. Lundin, Equifinality and sensitivity in freezing and thawing simulations of laboratory and in situ data, Cold Regions Science and Technology, 44(1), 20-37, 2006.
16. Javaux, M. R. Kasteel, J. Vanderborght, and M. Vanclooster, Interpretation of dye transport in a macroscopically heterogeneous, unsaturated subsoil with a one-dimensional model, Vadose Zone Journal, 5, 529–538, 2006.
17. Kodešová, R., J. Kozák, and J. Šimůnek Numerical study of macropore impact on ponded infiltration in clay soils, Soil and Water Research, 1(1), ISSN 1801-5395, 16-22, 2006.
18. Kodešová, R., V. Kodeš, A. Žigová and J. Šimůnek, Impact of plant roots and soil organisms on soil micromorphology and hydraulic properties, Biologia, 61/Suppl. 19, S339-S343, 2006.
19. Köhne, S., B. Lennartz, J. M. Köhne, and J. Šimůnek, Bromide transport at a tile-drained field site: experiment, one- and two-dimensional equilibrium and non-equilibrium numerical modeling, J. Hydrology, 321(1-4), 390-408, 2006.
20. Köhne, J. M., S. Köhne, and J. Šimůnek, Multi-process herbicide transport in structured soil columns: Experiment and model analysis, J. Contam. Hydrology, 85, 1-32, 2006.
21. Köhne, J. M., B. P. Mohanty, and J. Šimůnek, Inverse dual-permeability modeling of preferential water flow in a soil column and implications on field-scale solute transport prediction, Vadose Zone Journal, 5, 59-76, 2006.
22. Leij, F. J., A. Sciortino, and A. W. Warrick, Infiltration in two parallel soil columns, Water Resour. Res., 42, W12408, doi:10.1029/2006WR005009, 2006.
23. Li, Zhaohui, C. Willms, J. Alley, P. Zhang, R. S. Bowman, A shift in pathway of iron-mediated perchloroethylene reduction in the presence of sorbed surfactant - A column study, Water Research, 40(20), 3811-3819, 2006.
24. Lopez-Perez G. C., M. Arias-Estevez, E. Lopez-Periago, B. Soto-Gonzalez, B. Cancho-Grande, and J. Simal-Gandara, Dynamics of pesticides in potato crops, Journal of Agricultural and Food Chemistry, 54(5), 1797-1803, 2006.
25. Mertens, J., R. Stenger, and G. F. Barkle, Multiobjective Inverse Modeling for Soil Parameter Estimation and Model Verification, Vadose Zone Journal, 5(3), 917-933, 2006.
26. Nakajima, H. and A. T. Stadler, Centrifuge modeling of one-step outflow tests for unsaturated parameter estimations, Hydrol. Earth Syst. Sci., 10, 715–729, 2006.
27. Oquist, K. A., J. S. Strock, and D. J. Mulla, Influence of Alternative and Conventional Management Practices on Soil Physical and Hydraulic Properties, Vadose Zone Journal, 5(1), 356-364, 2006.
28. Pachepsky, Y., A. Guber, D. Jacques, J. Šimůnek, M. Th. van Genuchten, T. Nicholson, R. Cady, Information content and complexity of simulated soil water fluxes, Geoderma, 134, 253-266, 2006.
29. Pang, L. and J. Šimůnek, Evaluation of bacteria-facilitated cadmium transport in gravel columns using the HYDRUS colloid-facilitated solute transport model, Water Resour. Res., 42, W12S10, doi:10.1029/2006WR004896, 2006.
30. Pernyeszi T., R. Kasteel, B. Witthuhn, P. Klahre, H. Vereecken, and E. Klumpp, Organoclays for soil remediation: Adsorption of 2,4-dichlorophenol on organoclay/aquifer material mixtures studied under static and flow conditions, Applied Clay Science, 32(3-4), 179-189, 2006.
31. Peters, A., and W. Durner, Improved estimation of soil water retention characteristics from hydrostatic column experiments, Water Resour. Res., 42, W11401, doi:10.1029/2006WR004952, 2006.
32. Rumburg, B., G. H. Mount, D. Yonge, B. Lamb, H. Westberg, J. Filipy, J. Bays, R. Kincaid, and K. Johnson, Atmospheric flux of ammonia from sprinkler application of dairy waste, Atmospheric Environment, 40(37), 7246-7258, 2006.
33. Saito, H., J., J. Šimůnek, and B. Mohanty, Numerical analyses of coupled water, vapor and heat transport in the vadose zone, Vadose Zone Journal, 5, 784–800, 2006.
34. Saito, H., M. Sakai, J. Šimůnek, and N. Toride, Boundary conditions for numerical analysis of variably-saturated water flow in soils, J. Jpn. Soc. Soil Phys., 104, 63-73, 2006.
35. Sangsupan H. A., D. E. Radcliffe, P. G. Hartel, M. B., Jenkins, W. K. Vencill, and M. L. Cabrera, Sorption and transport of 17 beta-estradiol and testosterone in undisturbed soil columns, Journal of Environmental Quality, 35(6), 2261-2272, 2006.
36. Sarmah A. K., M. E. Close, R. Dann, L. Pang L, and S. R. Green, Parameter estimation through inverse modelling and comparison of four leaching models using experimental data from two contrasting pesticide field trials in New Zealand, Australian Journal of Soil Research, 44(6), 581-597, 2006.
37. Schoups, G., and J. W. Hopmans, Evaluation of model complexity and input uncertainty of field-scale water flow and salt transport, Vadose Zone Journal, 5, 951–962, 2006.
38. Schwartz, M. O., A. Schippers, and L. Hahn, Hydrochemical models of the sulphidic tailings dumps at Matchless (Namibia) and Selebi-Phikwe (Botswana), Environmental Geology, 49(4), 504-510, 2006.
39. Schwärzel, K., J. Šimůnek, H. Stoffregen, G. Wessolek, and M. Th. van Genuchten, Estimation of the unsaturated hydraulic conductivity of peat soils: laboratory versus field data, Vadose Zone Journal, 5, 628-640, 2006.
40. Schwärzel, K., J. Šimůnek, M. Th. van Genuchten, and G. Wessolek, Measurement and modeling of soil water dynamics and evapotranspiration in disturbed peatland soils, Journal of Plant Nutrition and Soil Science, 169, 762-774, 2006.
41. Šimůnek, J., Changming He, J. L. Pang, and S. A. Bradford, Colloid-facilitated transport in variably-saturated porous media: Numerical model and experimental verification, Vadose Zone Journal, 5, 1035-1047, 2006.
42. Šimůnek, J., D. Jacques, M. Th. van Genuchten, and D. Mallants, Multicomponent geochemical transport modeling using the HYDRUS computer software packages, J. Am. Water Resour. Assoc., 42(6), 1537-1547, 2006.
43. Skaggs, T. H., P. J. Shouse, and J. A. Poss, Irrigating Forage Crops with Saline Waters. 2. Modeling Root Uptake and Drainage, Vadose Zone J., 5, 824-837, 2006.
44. Spohrer, K., L. Herrmann, J. Ingwersen, and K. Stahr, Applicability of Uni- and Bimodal Retention Functions for Water Flow Modeling in a Tropical Acrisol, Vadose Zone Journal, 5(1), 48-58, 2006.
45. Struthers, I., C. Hinz, and M. Sivapalan, A multiple wetting front gravitational infiltration and redistribution model for water balance applications, Water Resour. Res., 42, W06406, doi:10.1029/2005WR004645, 2006.
46. Thomasson, M. J., P. J. Wierenga, and T. P. A. Ferre, A Field Application of the Scaled-Predictive Method for Unsaturated Soil, Vadose Zone Journal, 5, 1093–1109, 2006.
47. Torkzaban, S., S. M. Hassanizadeh, J. F. Schijven, H. A. M. de Bruin, and A. M. de Roda Husman, Virus Transport in Saturated and Unsaturated Sand Columns, Vadose Zone Journal, 5(3), 877-885, 2006.
48. Torkzaban, S., S. M. Hassanizadeh, J. F. Schijven, and H. H. J. L. van den Berg, Role of air‐water interfaces on retention of viruses under unsaturated conditions, Water Resour. Res., 42, W12S14, doi:10.1029/2006WR004904, 2006.
49. Weihermuller L., R. Kasteel, and H. Vereecken, Soil heterogeneity effects on solute breakthrough sampled with suction cups: Numerical simulations, Vadose Zone Journal, 5(3), 886-893, 2006.
50. Werner A. D., and D. A. Lockington, Artificial pumping errors in the Kool-Parker scaling model of soil moisture hysteresis, Journal of Hydrology, 325(1-4), 118-133, 2006.
51. Young, M. H., W. Albright, K. F. Pohlmann, G. Pohll, W. H. Zachritz, S. Zitzer, D. S. Shafer, I. Nester and L. Oyelowo, Incorporating Parametric Uncertainty in the Design of Alternative Landfill Covers in Arid Regions, Vadose Zone Journal, 5(2), 742-750, 2006.

2005

1. Bradford, S. A., and M. Bettahar, Straining, attachment, and detachment of cryptosporidium oocysts in saturated porous media, J. Environ. Qual., 34, 469-478, 2005.
2. Bradford, S. A., J. Šimůnek, M. Bettahar, Yadata Tadassa, M. Th. van Genuchten, and S. R. Yates, Straining of Colloids at Textural Interfaces, Water Resour. Res., 41, W10404, doi:10.1029/2004WR003675, 17 pp, 2005.
3. Casey, F. X. M., J. Šimůnek, J. Lee, G. L. Larsen, and H. Hakk, Sorption, mobility, and transformation of estrogenic hormones in natural soil, J. of Environ. Quality, 34, 1372-1379, 2005.
4. Green, C. T., D. A. Stonestrom, B. A. Bekins, K. C. Akstin, and M. S. Schulz, Percolation and transport in a sandy soil under a natural hydraulic gradient, Water Resour. Res., 41, W10414, doi:10.1029/2005WR004061, 2005.
5. Haws, N. W., P. S. C. Rao, J. Šimůnek, and I. C Poyer, Single-porosity and dual-porosity modeling of water flow and solute transport in subsurface-drained fields using effective field-scale parameters, J. of Hydrology , 313(3-4), 257-273, 2005.
6. Kelleners, T. J., R. W. O. Soppe, J. E. Ayars, T. H. Skaggs, and J. Šimůnek, Inverse analysis of upward water flow in a groundwater table lysimeter, Vadose Zone Journal, 4, 558–572, 2005.
7. Kodešová, R., J. Kozák, J. Šimůnek, and O. Vacek, Single and dual-permeability models of chlorotoluron transport in the soil profile, Plant, Soil and Environment, 51(7), ISSN 1214-1178, 310-315, 2005.
8. Lewandowska, J., A. Szymkiewicz, W. Gorczewska, and M. Vauclin, Infiltration in a double‐porosity medium: Experiments and comparison with a theoretical model, Water Resour. Res., 41, W02022, doi:10.1029/2004WR003504, 2005.
9. Moradi A., K. C. Abbaspour, and M. Afyuni, Modelling field-scale cadmium transport below the root zone of a sewage sludge amended soil in an arid region in Central Iran, Journal of Contaminant Hydrology, 79(3-4), 187-206, 2005.
10. Pot, V., J. Šimůnek, P. Benoit, Y. Coquet, A. Yra and M.-J. Martínez-Cordón, Impact of rainfall intensity on the transport of two herbicides in undisturbed grassed filter strip soil cores. J. of Contaminant Hydrology, 81, 63-88, 2005.
11. Sarmah A. K., M. E. Close, L. P. Pang, R. Lee, and S. R. Green, Field study of pesticide leaching in a Himatangi sand (Manawatu) and a Kiripaka bouldery clay loam (Northland). 2. Simulation using LEACHM, Hydrus-1D, GLEAMS, and SPASMO models, Australian Journal of Soil Research, 43(4), 471-489, 2005.
12. Schoups, G., C. Lee Addams, and S. M. Gorelick, Multi-objective calibration of a surface water-groundwater flow model in an irrigated agricultural region: Yaqui Valley, Sonora, Mexico, Hydrology and Earth System Sciences, 9, 549–568, 2005.
13. Schoups, G., J. W. Hopmans, C. A. Young, J.A. Vrugt, W. W. Wallender, Multi-criteria optimization of a regional spatially-distributed subsurface water flow model, J. Hydrology, 311, 20–48, 2005.
14. Šimůnek, J. and J. R. Nimmo, Estimating soil hydraulic parameters from transient flow experiments in a centrifuge using parameter optimization technique, Water Resour. Res., 41(4), W04015, doi:10.1029/2004WR003379, 2005.
15. Vanderborght J., R. Kasteel, M. Herbst, M. Javaux, D. Thiery, M. Vanclooster, C. Mouvet, and H. Vereecken,A set of analytical benchmarks to test numerical models of flow and transport in soils, Vadose Zone Journal, 4(1), 206-221, 2005.
16. van der Velde M., S. R. Green, G. W. Gee, M. Vanclooster, and B. E. Clothier, Evaluation of drainage from passive suction and nonsuction flux meters in a volcanic clay soil under tropical conditions, Vadose Zone Journal, 4(4), 1201-1209, 2005.
17. Wang, Sh.-X., J.-L. Zhou, F. Yu, and X.-G. Dong, Application of HYDRUS-1D Model to evaluating soil water resource, Research of Soil and Water Conservation, 12(2), 36-38, 2005.
18. Xu L. G., J. S. Yang, Q. Zhang, and G. M. Liu, Salt-water transport in unsaturated soils under crop planting: Dynamics and numerical simulation, Pedosphere, 15(5), 634-640, 2005.
19. Zerihun, D., A. Furman, W.A. Warrick, and C.A. Sanchez, A coupled surface-subsurface flow model for improved basin irrigation management, Journal of Irrigation and Drainage Engineering, American Society of Civil Engineers, 131(2), 111-128, 2005.
20. Zerihun, D., A. Furman, A. W. Warrick, and C. A. Sanchez, Coupled surface-subsurface solute transport model for irrigation borders and basins. I. Model development, Journal of Irrigation and Drainage Engineering, American Society of Civil Engineers, 131(5), 396-406, 2005.
21. Zerihun, D., C. A. Sanchez, A. Furman, and A. W. Warrick, Coupled surface-subsurface solute transport model for irrigation borders and basins. II. Model evaluation, Journal of Irrigation and Drainage Engineering, American Society of Civil Engineers, 131(5), 407-419, 2005.

2004

1. Bitterlich, S., W. Durner, S. C. Iden, and P. Knabner, Inverse Estimation of the Unsaturated Soil Hydraulic Properties from Column Outflow Experiments Using Free-Form Parameterizations, Vadose Zone Journal, 3(3), 971-981, 2004.
2. Buczko, U., L. Hopp, W. Berger, W. Durner, S. Peiffer, and M. Scheithauer, Simulation of chromium transport in the unsaturated zone for predicting contaminant entries into the groundwater, J. Plant Nutr. Soil Sci., 167, 284–292, 2004.
3. Casey, F. X. M., G. L. Larsen, H. Hakk, and J. Šimůnek, Fate and transport of testosterone in agriculturally significant soils. Environ. Sci. Technol., 38(3), 790-798, 2004.
4. Cassiani, G., C. Strobbia, and L. Gallotti, Vertical Radar Profiles for the Characterization of Deep Vadose Zones, Vadose Zone Journal, 3(4), 1093-1105, 2004.
5. Gerke, H. H. and J. M. Köhne, Dual-permeability modeling of preferential bromide leaching from a tile-drained glacial till agricultural field, J Hydrology, 289(1-4), 239-257, 2004.
6. Hansson, K., J. Šimůnek, M. Mizoguchi, L.-Ch. Lundin, Water flow and heat transport in frozen soil: Numerical solution and freeze/thaw applications, Vadose Zone Journal, 3(2), 693-704, 2004.
7. Kodesova R., J. Kozak, and O. Vacek, Field and numerical study of chlorotoluron transport in the soil profile, Plant Soil and Environment, 50(8), 333-338, 2004.
8. Köhne, J. M., B. Mohanty, J. Šimůnek, and H. H. Gerke, Numerical evaluation of a second-order water transfer term for variably saturated dual-permeability models, Water Resour. Res., 40, doi:10.1029/2004WR00385, 2004.
9. Köhne, J. M., S. Köhne, B. P. Mohanty, and J. Šimůnek, Inverse mobile-immobile modeling of transport during transient flow: Effect of between-domain transfer and initial water content, Vadose Zone Journal, 3(4), 1309-1321, 2004.
10. Leij, F. J., N. Romano, M. Palladino, M. G. Schaap, and A. Coppola, Topographical attributes to predict soil hydraulic properties along a hillslope transect, Water Resour. Res., 40, W02407, doi:10.1029/2002WR001641, 2004.
11. Meng, J.-L., X.-G. Dong, J.-L. Zhou, and J.-L. Li, Application of HYDRUS model to study of relation between irrigation and soil salinity in the arid area, Journal of Xinjiang Agricultural University, 27(1), 45-49, 2004.
12. Moroizumi, T. and H. Horino, Tillage effects on subsurface drainage, Soil Sci. Soc. Am. J., 68, 1138–1144, 2004.
13. Nakamura, K. , T. Harter, Y. Hirono, H. Horino and T. Mitsuno, Assessment of Root Zone Nitrogen Leaching as Affected by Irrigation and Nutrient Management Practices, Vadose Zone Journal, 3(4), 1353-1366, 2004.
14. Sommer, R., P. L. G. Vlek, T. Deane de Abreu, K. Vielhauer, R. de Fátima Rodrigues Coelho, and H. Fölster, Nutrient balance of shifting cultivation by burning or mulching in the Eastern Amazon – evidence for subsoil nutrient accumulation, Nutrient Cycling in Agroecosystems, 68, 257–271, 2004.
15. Vrugt, J. A., G. Schoups, J. W. Hopmans, C. Young, W. W. Wallender, T. Harter, and W. Bouten, Inverse modeling of large-scale spatially distributed vadose zone properties using global optimization, Wat. Resour. Res., 40, W06503, doi:10.1029/2003WR002706, 2004.
16. Zhang, P., J. Šimůnek, and R. S. Bowman, Nonideal transport of solute and colloidal tracers through reactive zeolite/iron pellets, Water Resour. Res., 40, doi:10.1029/2003WR002445, 2004.

2003

1. Bi, J.-W., J.-B. Zhang, X.-M. Chen, An.-N. Zhu, and J. Feng, Modeling of soil water drainage and nitrate N leaching in arable soil, Journal of Irrigation and Drainage, 22(6), 23-26, 2003.
2. Bradford, S. A., J. Šimůnek, M. Bettehar, M. Th. van Genuchten, and S. R. Yates, Modeling colloid attachment, straining, and exclusion in saturated porous media, Environ. Sci. Technol., 37(10), 2242-2250, 2003.
3. Cau, Q. H. and Y. S. Gong, Simulation and analysis of water balance and nitrogen leaching using Hydrus-1D under winter wheat crop, Plant Nutr. Fert. Sci., 9(2) 139-145, 2003 (in Chinese).
4. Casey, F. X. M., G. L. Larsen, H. Hakk, and J Šimůnek, Fate and transport of 17ß-Estradiol in soil-water systems, Environ. Sci. Technol., 37(11), 2400-2409, 2003.
5. Castiglione, P., B. P. Mohanty, P. J. Shouse, J. Šimůnek, M. Th. van Genuchten, and A. Santini, Lateral water diffusion in an artificial macroporous system: Theory and experimental evidence, Vadose Zone Journal, 2, 212-221, 2003.
6. Hammecker, C., A. C. D. Antonino, J. L. Maeght, And P. Boivin, Experimental and numerical study of water flow in soil under irrigation in northern Senegal: evidence of air entrapment, Europ. J. Soil Sci., 54(3), 491–503, 2003.# Heistermann M., B. Jene, G. Fent, M. Feyerabend, R. Seppelt, O. Richter, and R. Kubiak R, Modelling approaches to compare sorption and degradation of metsulfuron-methyl in laboratory micro-lysimeter and batch experiments, Pest Management Science, 59(12), 1276-1290, 2003.
7. Mallants, D., D. Jacques, and T. Zeevaert, Modeling 226 Ra, 222 Rn, and 210 Pb migration in a proposed surface repository of very low-level long-lived radioactive waste, Proceedings of ICEM 2003, The 9th International Conference on Radioactive Waste Management and Environmental Remediation, September 21-25, 2003, Examination School, Oxford, England, icem03-4632, 8 pp, 2003.
8. Scanlon, B., K. Keese, R. C. Reedy, J. Šimůnek, and B. Andraski, Variations in flow and transport in thick desert vadose zones in response to paleoclimatic forcing (0 – 90 kyr): Monitoring, modeling, and uncertainties, Water Resour. Res. 39(7), 1179, doi:10.1029/2002WR001604, 13.1-13.7, 2003.
9. Šimůnek, J., N. J. Jarvis, M. Th. van Genuchten, and A. Gärdenäs, Review and comparison of models for describing non-equilibrium and preferential flow and transport in the vadose zone, Journal of Hydrology, 272, 14-35, 2003.
10. Sommer R., H. Folster, K. Vielhauer, E. J. M. Carvalho, and P. L. G. Vlek, Deep soil water dynamics and depletion by secondary vegetation in the Eastern Amazon, Soil Science Society of America Journal, 67(6), 1672-1686, 2003.
11. Thomasson, M. J., and J. Wierenga, Spatial variability of the effective retardation factor in an unsaturated field soil, J Hydrology, 272(1-4), 213-225, 2003.
12. Vrugt, J. A., W. Bouten, H. V. Gupta, and J. W. Hopmans, Toward Improved Identifiability of Soil Hydraulic Parameters, Vadose Zone Journal, 2(1), 98-113, 2003.

2002

1. Blasch, K. W., T. P. A. Ferré, A. H. Christensen, and J. P. Hoffmann, New Field Method to Determine Streamflow Timing Using Electrical Resistance Sensors, Vadose Zone Journal, 1(2), 289-299, 2002.
2. Bradford, S. A., S. R. Yates, M. Bettehar, and J. Šimůnek, Physical factors affecting the transport and fate of colloids in saturated porous media, Water Resour. Res., 38(12), 1327, doi:10.1029/2002WR001340, 63.1-63.12, 2002.
3. Hermsmeyer D, J. Ilsemann, J. Bachmann, R. R. van der Ploeg, and R. Horton, Model calculations of water dynamics in lysimeters filled with granular industrial wastes, J. of Plant Nutrition and Soil Science (Zeitschrift Fur Pflanzenernahrung Und Bodenkunde), 165(3), 339-346, 2002.
4. Jacques, D., Modelling the interaction of Boom Clay with an alkaline plume using the reactive transport model PHREEQC, IR-0009, Waste & Disposal SCK*CEN, Mol, Belgium, pp. 55, 2002.**
5. Jacques, D., J. Šimůnek, A. Timmerman, and J. Feyen, Calibration of Richards' and convection-dispersion equations to field-scale water flow and solute transport under rainfall conditions, J. of Hydrology, 259, 15-31, 2002.
6. Jandl, R., H. Spögler, J. Šimůnek, and L. K. Heng, Simulation of soil hydrology and establishment of a nitrogen budget of a mountain forest, Environmental Science & Pollution Research, 9(Special Issue 2), 42-45, 2002.
7. Kahle P., C. Criegee, and B. Lennartz, Willow stands as an alternative method for the reduction of leachate at contaminated sites - numerical investigations, J Plant Nutr Soil Sc, 165(4), 501-505, 2002.
8. Lee, J., S. Lakhwinder, S. Hundal, R. Horton, and M. L. Thompson, Sorption and transport behavior of naphthalene in an aggregated soil, J. Environ. Qual., 31, 1716–1721 2002.
9. Leij, F. J., and M. Th. van Genuchten, Solute Transport, Chapter 6 in: Soil Physics Companion, A. W. Warrick (eds.), CRC Press, New York, NY, 2002. **
10. Mertens J., D. Raes, and J. Feyen, Incorporating rainfall intensity into daily rainfall records for simulating runoff and infiltration into soil profiles, Hydrological Processes, 16(3), 731-739, 2002.
11. Scanlon, B. R., M. Christman, R. Reedy, I. Porro, J. Šimůnek, and G. Flerchinger, Intercode comparisons for simulating water balance of surficial sediments in semiarid regions, Water Resour. Res., 38(12), 1323, doi:10.1029/2001WR001233, 59.1-59.16, 2002.
12. Schijven, J., and J. Šimůnek, Kinetic modeling of virus transport at field scale, J. of Contam. Hydrology, 55(1 2), 113 135, 2002. **
13. Seuntjens, P., Field-Scale Cadmium Transport in a Heterogeneous Layered Soil, Water, Air, and Soil Pollution, 140, 401–423, 2002.
14. Seuntjens, P., D. Mallants, J. Šimůnek, J. Patyn, and D. Jacques, Sensitivity analysis of physical and chemical properties affecting field-scale cadmium transport in a heterogeneous soil profile, J. of Hydrology, 264, 185-200, 2002.
15. Vanderborght, J., P. Gähwiller, and H. Flühler, Identification of transport processes in soil cores using florescent tracers, Soil Sci. Soc. Am. J., 66, 774-787, 2002. **
16. Vrugt, J. A. and W. Bouten, Validity of first-order approximations to describe parameter uncertainty in soil hydrologic models, Soil Sci. Soc. Am. J., 66, 1740-1751, 2002.
17. Vrugt, J. A., W. Bouten, H. V. Gupta, and S. Sorooshian, Toward improved identifiability of hydrologic model parameters: The information content of experimental data, Water Resour. Res., 38(12), 1312, doi:10.1029/2001WR001118, 2002.
18. Wang, Q., R. Horton, and M. Shao, Horizontal infiltration method for determining brooks-corey model parameters, Soil Sci. Soc. Am. J., 66, 1733–1739, 2002.
19. Young, M., Karagunduz, A., J. Šimůnek, and K. D. Pennell, Modified upward infiltration method for characterizing soil hydraulic properties, Soil Sci. Soc. Am. J., 66, 57-64, 2002. **

2001

1. Casey, F. X. M., and J. Šimůnek, Inverse analyses of the transport of chlorinated hydrocarbons subject to sequential transformation reactions, J. of Environ. Quality, 30(4), 1354-1360, 2001. **
2. Diaw E. H. B., F. Lehmann, and P. Ackerer, Modeling a non-conservative solute transfer in unsaturated porous media, Comptes Rendus De L Academie Des Sciences Serie Ii Fascicule A-Sciences De La Terre Et Des Planetes, 333(2), 129-132, 2001.
3. Seuntjens, P., K. Tirez, J. Šimůnek, M. Th. van Genuchten, C. Cornelis, and P. Geuzens. Aging effects on cadmium transport in undisturbed contaminated sandy soil columns. Journal of Environmental Quality, 30, 1040-1050, 2001. **
4. Seuntjens, P., D. Mallants, C. Cornelis, and P. Geuzens, Nonequilibrium Cadmium leaching in layered sandy soils, Soil Sci., 166(8), 507-519, 2001.
5. Šimůnek, J., O. Wendroth, N. Wypler, and M. Th. van Genuchten, Nonequilibrium water flow characterized from an upward infiltration experiment, European J. of Soil Sci., 52(1), 13-24, 2001. *+
6. Vrugt, J.A., M. T. van Wijk, J. W. Hopmans, and J. Šimůnek, One-, two-, and three-dimensional root water uptake functions for transient modeling, Water Resour. Res., 37(10), 2457-2470, 2001. *
7. Wildenschild, D., J. W. Hopmans, and J. Šimůnek, Parameter estimation for variable-rate outflow experiments: Direct and inverse estimation approaches, Soil Sci. Soc. Am. J., 65(1), 35-48, 2001. *+

2000

1. de Vos J. A., D. Hesterberg, and P. A. C. Raats, Nitrate leaching in a tile-drained silt loam soil, Soil Sci. Soc. Am. J., 64(2), 517-527, 2000.
2. Inoue, M., J. Šimůnek, S. Shiozawa, and J. W. Hopmans, Estimation of soil hydraulic and solute transport parameters from transient infiltration experiments, Advances in Water Resources, 23, 677-688, 2000. **+
3. Li, G. H., Z. W. Tang, L. W. Mays, and P. Fox, New methodology for optimal operation of soil aquifer treatment systems, Water Resources Management, 14(1), 13-33, 2000.
4. Majdoub R., J. Gallichand, and J. Caron, Simulation of soil water flow based on the numerical method of lines, Canadian Agricultural Engineering, 42(2), 65-74, 2000.
5. Qualls, R. G., B. L. Haines, W. T. Swank, and S. W. Tyler, Soluble organic and inorganic nutrient fluxes in clearcut and mature deciduous forests, Soil Sci. Soc. Am. J., 64, 1068-1077, 2000. +
6. Scott, R. L., W. J. Shuttleworth, T. O. Keefer, and A. W. Warrick, Modeling multiyear observations of soil moisture recharge in the semiarid American Southwest, Water Resour. Rer., 36(8), 2233-2247, 2000. *
7. Scott R. L., W. J. Shuttleworth, T. O. Keefer, and A. W. Warrick, Modeling multiyear observations of soil moisture recharge in the semiarid American Southwest, Water Resources Research, 36(8), 2233-2247, 2000.
8. Šimůnek, J., J. W. Hopmans, M. Th. van Genuchten, and D. R. Nielsen, Horizontal infiltration revisited using parameter estimation, Soil Sci., 165(9), 708-717, 2000. **+
9. Ventrella, D., B. P. Mohanty, J. Šimůnek, N. Losavio, and M. Th. van Genuchten, Water and chloride transport in a fine-textured soil: Field experiments and modeling, Soil Sci., 165(8), 624-631, 2000. **+

1999

1. Šimůnek, J., and M. Th. van Genuchten, Using the Hydrus-1D and Hydrus-2D codes for estimating unsaturated soil hydraulic and solute transport parameters, in van Genuchten, M. Th., F. J. Leij, and L. Wu (eds.) Characterization and Measurement of the Hydraulic Properties of Unsaturated Porous Media, University of California, Riverside, CA, 1523-1536, 1999. *+
2. Šimůnek, J., O. Wendroth, and M. Th. van Genuchten, Estimating soil hydraulic properties from laboratory evaporation experiments by parameter estimation, in van Genuchten, M. Th., F. J. Leij, and L. Wu (eds.) Characterization and Measurement of the Hydraulic Properties of Unsaturated Porous Media, University of California, Riverside, CA, 713-724, 1999. *+
3. Vanderborght, J., Gahwiller, P., Bujukova, S., and H. Fluhler, Identification of transport processes from concentration patterns and breakthrough curves of fluorescent tracers, in J. Feyen and K. Wiyo (eds.) Modelling of Transport Process in Soils at Various Scales in Time and Space, Proc. of Intern. Workshop of EurAgEng's Field of Interest on Soil and Water, Leuven, Belgium, 24-26 November, 77-87, Wageningen Pers, Wageningen, The Netherlands, 1999. **+

1998

1. Liu, Q.-CH., and Sh.-Ch. Xie, A study on field soil water balance for summer corn in north China plain, Journal of Hydraulic Engineering, 1, 62-6, 1998.
2. Šimůnek, J., O. Wendroth, and M. Th. van Genuchten, A parameter estimation analysis of the evaporation method for determining soil hydraulic properties, Soil Sci. Soc. Am. J., 62(4), 894-905, 1998. *+

1997

1. Schwager, A., M. Boller, Transport phenomena in intermittent filters, Water Sci. Technol., 35(6), 13-20, 1997.

1996

1. Persicani D., Pesticide leaching into field soils: Sensitivity analysis of four mathematical models, Ecological Modelling, 84 (1-3), 265-280, 1996.

References of UNSATCHEM (incorporated into Hydrus-1D):

1. Šimůnek, J., and D. L. Suarez, Sodic soil reclamation using multicomponent transport modeling, ASCE J. Irrig. and Drain. Engineering, 123(5), 367-376, 1997.
2. Suarez, D. L., and J. Šimůnek, UNSATCHEM: Unsaturated water and solute transport model with equilibrium and kinetic chemistry, Soil Sci. Soc. Am. J., 61, 1633-1646, 1997.
3. Vaughan, P. J., D. L. Suarez, J. Šimůnek, D. L. Corwin, and J. D. Rhoades, Role of groundwater flow in variation of discharge from tile drain systems, J. Environ. Qual., 28, 403-410, 1999.
4. Kaledhonkar, M. J., N. K. Tyagi, and S. E. A. T. M. Van Der Zee, Solute transport modelling in soil for irrigation field experiments with alkali water, Agricultural Water Management, 51, 153-171, 2001.
5. Suarez, D. L., Soil sodic reclamation: Modelling and field study, Aust. J. Soil Res., 39, 1225-1246, 2001.
6. Schoups, G., J. W. Hopmans, C. A. Young, J. A. Vrugt, W. W. Wallender, K. K. Tanji, and S. Panday, Sustainability of irrigated agriculture in the San Joaquin Valley, California, doi: 10.1073/pnas.0507723102, Proc. Nat. Academy Sci., 102(43), 15352-15356, 2005.
7. Vaughan, P. J., P. J. Shouse, D. L. Suarez, M. Th. Van Genuchten, and J. E. Ayars, Analysis of field-scale salinization: A comparison of different modeling approaches, J. Hydrol. Hydromech., 53(2), 73–90, 2005.
8. Decker, D. L., J. Šimůnek, S. W. Tyler, Ch. Papelis, and M. Logsdon, Variably saturated reactive transport of arsenic in heap leach facilities, Vadose Zone Journal, 5, 430-444, 2006.
9. Gonçalves, M. C., J. Šimůnek, T. B. Ramos, J. C. Martins, M. J. Neves, and F. P. Pires, Multicomponent solute transport in soil lysimeters irrigated with waters of different quality, Water Resour. Res., 42, W08401, doi:10.1029/2006WR004802, 17 pp., 2006.
10. Kaledhonkar, M. J., and A. K. Keshari, Modelling the effects of saline water use in agriculture, Irrig. and Drain., 55(2), 177–190, 2006.
11. Kaledhonkar, M. J., A. K. Keshari, S. E. A. T. M. van der Zee, Relative sensitivity of ESP profile to spatial and temporal variability in cation exchange capacity and pore water velocity under simulated field conditions, Agric. Water Management, 83(1–2), 58–68, 2006.
12. Schoups, G., J. W. Hopmans, and K. K. Tanji, Evaluation of model complexity and space–time resolution on the prediction of long-term soil salinity dynamics, western San Joaquin Valley, California, Hydrol. Process., 20, 2647–2668, 2006.
13. Skaggs, T. H., P. J. Shouse, and J. A. Poss, Irrigation of forage crops with saline drainage waters: 1. Volumetric Lysimeter Studies, Vadose Zone J., 5, 8154–823, 2006.
14. Skaggs, T. H., P. J. Shouse, and J. A. Poss, Irrigation of forage crops with saline drainage waters: 2. Modeling drainage and root water uptake, Vadose Zone J., 5, 824–837, 2006.
15. Suarez, D. L., J. D. Wood, and S. M. Lesch, Effect of SAR on water infiltration under a sequential rain–irrigation management system, Agricultural Water Management, 86(1–2), 150-164, 2006.
16. Corwin, D. L., J. D. Rhoades, J. Šimůnek, Leaching Requirement for Soil Salinity Control: Steady-State vs. Transient-State Models, Agric. Water Management, 2007.
17. Gonçalves, M. C., T. B. Ramos, J. Šimunek, M. J. Neves, J. C. Martins, F. P. Pires, and P. Leitão, Modelação da dinâmica da água e dos sais num Aluviossolo regado com águas de diferente qualidade: ensaio de validação do modelo HYDRUS-1D com observações em monólitos (Water and solute transport simulation in a Fluvisol irrigated with waters of different quality: testing the HYDRUS-1D model with observations in soil monoliths) (in Portugeese with English abstract), Rev. de Ciências Agrárias, 30(2), ISSN 0871-018X, 38-52, 2007.
18. Bauer, J., M. Herbst, J. A. Huisman, L. Weihermüller, H. Vereecken, Sensitivity of simulated soil heterotrophic respiration to choice of temperature and moisture reduction functions, Geoderma, 145, 17-27, 2008.
19. Buchner, J. S., J. Šimůnek, J. Lee, D. E. Rolston, J. W. Hopmans, A. P. King, and J. Six, Evaluation of CO2 fluxes from an agricultural field using a process-based numerical model, J. Hydrology, doi: 10.1016/j.jhydrol.2008.07.035, 361(1-2), 131– 143, 2008.
20. Herbst, M., H. J. Hellebrand, J. Bauer, J. A. Huisman, J. Šimůnek, L. Weihermüller, A. Graf, J. Vanderborght, and H. Vereecken, Multiyear heterotrophic soil respiration: evaluation of a coupled CO2 transport and carbon turnover model, Ecological Modelling, 214, 271-283, 2008.
21. Weihermüller, L., M. Lamers, and M. Reichstein, Introduction to production, transport, and emission of trace gases from the vadose zone to the atmosphere, Vadose Zone J., 10, 151–155, doi:10.2136/vzj2010.0117, 2011.
22. Ramos, T. B., J. Šimůnek, M. C. Gonçalves, J. C. Martins, A. Prazeres, N. L. Castanheira, and L. S. Pereira, Field evaluation of a multicomponent solute transport model in soils irrigated with saline waters, J. of Hydrology, 407(1-4), 129-144, 2011.
23. Kaledhonkar, M. J., D. R. Sharma, N. K. Tyagi, A. Kumar, and S.E.A.T.M. Van Der Zee, Modeling for conjunctive use irrigation planning in sodic groundwater areas, Agricultural Water Management, 107, 14-22, 2012.
24. Reading, L. P., T. Baumgartl, K. L. Bristow, and D. A. Lockington, Applying HYDRUS to flow in a sodic clay soil with solution composition–dependent hydraulic conductivity, Vadose Zone Journal, 11(2), doi:10.2136/vzj2011.0137, 2012.
25. Reading, L. P., T. Baumgartl, K. L. Bristow, and D. A. Lockington, Applying HYDRUS to flow in a sodic clay soil with solution composition–dependent hydraulic conductivity, Vadose Zone Journal, 11(2), doi:10.2136/vzj2011.0137, 2012.
26. Rasouli, F., A. J. Pouya, and J. Šimůnek, Modeling the effects of saline water use in wheat-cultivated lands using the UNSATCHEM model, Irrigation Science, doi:10.1007/s00271-012-0383-8, 16 pp., (in print).

References of HP1 (incorporated into Hydrus-1D):

1. Jacques, D., J. Šimůnek, D. Mallants, M. Th. van Genuchten, Multicomponent transport model for variably-saturated porous media: Application to the transport of heavy metals in soils, In: Computational Methods in Water Resources (Eds. Hassanizadeh, S.M., R.J. Schotting, W.G. Gray, and G.F. Pinder), XIVth International Conference on Computational Methods in Water Resources, June 23-28, 2002, Delft, The Netherlands. Elsevier, Developments in Water Science, 47, 555-562, 2002.
2. Jacques, D., J. Šimůnek, D. Mallants, and M. Th. van Genuchten, The HYDRUS-PHREEQC multicomponent transport model for variably-saturated porous media: Code verification and application, MODFLOW and More 2003: Understanding through Modeling, Conference Proceedings, ed. E. Poeter, Ch. Zheng, M. Hill, and J. Doherty, International Ground Water Modeling Center, Colorado School of Mines, 23-27, 2003.
3. Jacques, D., J. Šimůnek, D. Mallants, and M. Th. van Genuchten, Long term uranium migration in agricultural field soils following mineral P-fertilization, Proc. of ICEM ’05: “The 10th Int. Conf. on Environ. Remediation and Radioactive Waste Management", Sept. 8-8, 2005, Scottish Exhibition & Conference Center, Glasgow, Scotland, UK, 2005.
4. Jacques D., J. Šimůnek, D. Mallants, and M. Th. van Genuchten, Modelling uranium leaching from agricultural soils to groundwater as a criterion for comparison with complementary safety indicators. In ‘Scientific basis for nuclear waste management XXIX’ (Ed. P. Van Iseghem), Mat. Res. Soc. Symp. Proc., 932: 1057-1064, 2006.
5. Jacques, D., J. Šimůnek, D. Mallants, and M. Th. van Genuchten, Operator-splitting errors in coupled reactive transport codes for transient variably saturated flow and contaminant transport in layered soil profiles, J. Contam. Hydrology, 88, 197-218, 2006.
6. Šimůnek, J., D. Jacques, M. Th. van Genuchten, and D. Mallants, Multicomponent geochemical transport modeling using the HYDRUS computer software packages, J. Am. Water Resour. Assoc., 42(6), 1537-1547, 2006.
7. Jacques, D., D. Mallants, J. Šimůnek, and M. Th. van Genuchten, Modelling the fate of uranium from inorganic phosphorus fertilizer applications in agriculture, In: De Kok, L. J. and E. Schnug (eds.), Loads and Fate of Fertilizer-Derived Uranium, Backhuys Publishers, Leiden, The Netherlands, ISBN/EAN 978-90-5782-193-6, 57-64, 2008.
8. Jacques, D., J. Šimůnek, D. Mallants, and M. Th. van Genuchten, Modeling coupled hydrological and chemical processes: Long-term uranium transport following mineral phosphorus fertilization, Vadose Zone Journal, doi:10.2136/VZJ2007.0084, Special Issue “Vadose Zone Modeling”, 7(2), 698-711, 2008.
9. Jacques, D., J. Šimůnek, D. Mallants and M. Th. van Genuchten, Modelling coupled water flow, solute transport and geochemical reactions affecting heavy metal migration in a Podzol soil, Geoderma, doi:10.1016/j.geoderma.2008.01.009, 145, 449-461, 2008.
10. Šimůnek, J., D. Jacques, N. K. C. Twarakavi, and M. Th. van Genuchten, Selected HYDRUS modules for modeling subsurface flow and contaminant transport as influenced by biological processes at various scales, Biologia, 64(3), 465-469, DOI: 10.2478/s11756-009-0106-7, 2009.
11. Bessinger, B. A., and C. D. Marks, Treatment of Mercury-Contaminated Soils With Activated Carbon: A Laboratory, Field, and Modeling Study, Remediation (The journal of Environmental Cleanup Costs, Technologies, & Techniques), DOI: 10.1002/rem.20275, 21(1), 115-135, 2010.
12. Jacques, D., L. Wang, E. Martens, and D. Mallants, Modelling chemical degradation of concrete during leaching with rain and soil water types, Cement and Concrete Research, 40(8), 1306-1313, 2010.
13. Jacques, D., J. Šimůnek, D. Mallants, M. Tth. van Genuchten, and L. Yu, A coupled reactive transport model for contaminant leaching from cementitious waste matrices accounting for solid phase alterations, Proceedings of Thirteenth International Waste Management and Landfill Symposium, October 3-7 2011, S. Margherita di Pula (Cagliari), Sardinia, Italy, 8 pp., 2011.
14. Jacques, D., J. Šimůnek, D. Mallants, J. Perko, and S. Seetharam, Evaluating changes of transport properties of chemically degrading concrete using a coupled reactive transport model, NUWCEM 2011, Proceedings of the 1st International Symposium on Cement-based Materials for Nuclear Wastes, 11 pp., Avignon, France, October 11-14, 2011.
15. Jacques, D., C. Smith, J. Šimůnek, and D. Smiles, [[../Documents/Jirka/Jacques_et_al_JCH_2012.pdf Inverse optimization of hydraulic, solute transport, and cation exchange parameters using HP1 and UCODE to simulate cation exchange]], J. Contaminant Hydrology, 142-143, 109-125, 2012.
16. Batalha, M. S., C. R. Bezerra, D. Jacques, M. C. Barbosa, E. M. Pontedeiro, and M. Th. van Genuchten, Multicomponent transport predictions of 226Ra in soil following the use of phosphogypsum, 4th International Conference on Engineering Waste and Biomass Valorization, September 1-13 2012, Porto, Portugal (Eds. A. Nzihou and F. Castro), 255-260, 2012.

... * Water Flow ...
... ** Solute Transport ...
... + Inverse Problem ...